Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6524g00001 ATGGACAGGCTCATAAAGTTAGAGCCTTCAAACACAGTCGTAATAAGAGTAGAACCAGGCCAAAAGTGCCAAGGCAAAATCACCTTACACAACGTCATGCACACAATGCCGGTGGCCTTCAGGCTTCAACCCCTCATCAAAACTCGTTACGTAGTTAAGCCCCACTCAGGTATTATCTCCCCCTTAGCCACGCTCACTGTAGAAATCACCTATCATACACCCTCCACCACCACCCTCCCCCATTCCTTCCCTCACTCCAACGACTCCTTCCTCCTACACAGTGTCTTGGTTCCAGGAGCCGCCATCAGAGAACCCTCCTCCATGTTCGACGCTGTTCCCTCCGACTGGTTTAAGAAAAAACAAGTCTTCGTCGACAGCGGCATAAGGGTCATGTTTTTAGGGTCACACATTCTGGCCCACTTGGTCTCGCTCGGCGAAATCGATGAGGTAAGGGAAGCTCTGGAGAGAAGCGACCCTTCATGGGGAATTGTAAACAGCACCGACCCACATGGCCAGACATTGCTCCACTTGGCGGTCGCACAGGGAAGAGCTGACCTCGTTCAGCTGCTTCTGGAGTTCGAGGCCGATACCGAGGCAACAAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCATCGTGTAACGAAACATTGATCGTGGAGCTTCTTCTGGCTCGCAGGGCCAACACGGAGCGAGCTGAAATGGCCGTGTTTGGGCCGATTCATCAAGCGGCTAGAGGAGGACACGTGGAGGTCCTGAGACTGCTCTTGCTCAAAGGCGCCAAAGTGGACTCGCTCACGAAAGACGGCAACACTGCTTTGCACGTTGCAGTTGAGGAGCGTCGAAGAGACTGTGTTAGACTTCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACGCAAGAGAAGGTGACACCCCTTTGCAAACGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTCCTGCTGCAAAAGGGCAATGCCAAAAAGGACGTTCGAAACGCACAAGGAAAAACCGCCTACGACGTCGCGGTGGAGAACGGCCACGAGCGCCTCTTTGACGCCCTGAGTCTGGGCGACAAGCTGTGCACGGCTGCAAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTGGAGAACGGCGCGGACCTTAACGGGAGGGACCAGCACGGTTGGACCGCGCTGCACCGGGCCTCGTTCAAAGGGCGAATCGACGTGGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAAGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCACGCAGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGACGTTGAGGCGAGGACTAGGAAGGGCGTGAGCGCGTTGCAGATAACAGAGTCGTTGAACTACGTGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAGAGTCGCTGCGTTTGGTGCAATTGCTTTTGGGAGTAAGATAATGGAAGGTGGGGGTGTTGTTAAGAAGAGGAGGGGTGGTGACAGAGGTAATATCAGAGGGTTGAATAATGGTGCTGGTTTTGGTCGCTCAATGGCTCTGGCTGTGCTCTAA 1617 0.5461 MDRLIKLEPSNTVVIRVEPGQKCQGKITLHNVMHTMPVAFRLQPLIKTRYVVKPHSGIISPLATLTVEITYHTPSTTTLPHSFPHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFVDSGIRVMFLGSHILAHLVSLGEIDEVREALERSDPSWGIVNSTDPHGQTLLHLAVAQGRADLVQLLLEFEADTEATNRSGLTPLEAAASCNETLIVELLLARRANTERAEMAVFGPIHQAARGGHVEVLRLLLLKGAKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNAREGDTPLQTAAAAGDESMVKLLLQKGNAKKDVRNAQGKTAYDVAVENGHERLFDALSLGDKLCTAAKKGEVRTIQKLLENGADLNGRDQHGWTALHRASFKGRIDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVSALQITESLNYVGITRVLVNGGASRENSDRVAAFGAIAFGSKIMEGGGVVKKRRGGDRGNIRGLNNGAGFGRSMALAVL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Vium6524g00001 538 SUPERFAMILY Ankyrin repeat 164 488 IPR036770 -
Vium6524g00001 538 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Vium6524g00001 538 Gene3D - 130 237 IPR036770 -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Vium6524g00001 538 PRINTS Ankyrin repeat signature 392 407 IPR002110 GO:0005515
Vium6524g00001 538 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat region circular profile. 240 264 - -
Vium6524g00001 538 Gene3D Immunoglobulins 1 129 IPR013783 -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 240 268 IPR002110 GO:0005515
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Vium6524g00001 538 Gene3D - 238 307 IPR036770 -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Vium6524g00001 538 Gene3D - 308 357 IPR036770 -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 203 235 IPR002110 GO:0005515
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
Vium6524g00001 538 SUPERFAMILY PapD-like 2 140 IPR008962 -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 391 420 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 424 453 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 457 486 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 269 298 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 303 333 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 203 232 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 236 265 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vium6524g00001 538 SMART ANK_2a 337 387 IPR002110 GO:0005515
Vium6524g00001 538 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Vium6524g00001 538 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Vium6524g00001 538 Pfam Ankyrin repeats (many copies) 164 209 IPR002110 GO:0005515
Vium6524g00001 538 PANTHER MOLTING PROTEIN MLT-4 240 488 - -
Vium6524g00001 538 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Vium6524g00001 538 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Vium6524g00001 538 Gene3D - 358 491 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6524g00001 Vium-Chr6524 862 3093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6524g00001 357 467 Ion Channels AT4G32500 31.532 4.90e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6524g00001 - - gmx:100782444 853.973