Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6522g00001 ATGGATCTCAAAGGGAGNCTCGGCCACCCCACCTCCATAGCCGCCACTCTCTGTGATATCTGTCATGAGAAGCGCGCCTATGTCTTCTGCAGACAAGACAGAGCTCTCCTTTGCAGACAATGTGATGTTTCCATCCATGATGTCAACGAACATACCAAGACGCACGACAGGTTTCTTTTCACTGGAATAACGCTTGAAGAAAAAACCAGAACAACCTCAACCTCGTCAACCTCAAACCCCGCACAAACTTCACTCTCGAACGAGAACATTGATTCTTTTGCTTCTTCTCGCACACTTAATAACTCGAGTTCGGTTCTCACTGGAATAACGCTTGAAGAAAAAACAACCTCAACCTCATCAACCTCGAACGAAAACATCGATCCTTTTGGTTCTTCTCGCACAGTTTATAACTCGAATTCGGTTTCAACAAGTAGCTTATCCGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCGTTTGCTGCATCAAATGCTTTCTCTAAGGATTATGAGTTTCCGAATGAAGATGTTCAAGTTAGCATGTGCTCCATCCCACTGCAAACTCAATTTAACACTGCTTCGAATGTTTATCCTGAAATGCCAAAAGCTAAAGCCGGTGAAGGATACTCAGATTGGATTCATAATTCTGATTCCGCAGCCTATAAAGTTCCATCGATTACTTCTCCTTTAGTAAAAAAAATTAAACGCTCTCGTTGA 738 0.4282 MDLKGXLGHPTSIAATLCDICHEKRAYVFCRQDRALLCRQCDVSIHDVNEHTKTHDRFLFTGITLEEKTRTTSTSSTSNPAQTSLSNENIDSFASSRTLNNSSSVLTGITLEEKTTSTSSTSNENIDPFGSSRTVYNSNSVSTSSLSEYLIQTIPGYCMEDLLDASFAASNAFSKDYEFPNEDVQVSMCSIPLQTQFNTASNVYPEMPKAKAGEGYSDWIHNSDSAAYKVPSITSPLVKKIKRSR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6522g00001 245 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vium6522g00001 245 CDD Bbox1_BBX-like 17 60 - -
Vium6522g00001 245 MobiDBLite consensus disorder prediction 115 134 - -
Vium6522g00001 245 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vium6522g00001 245 PANTHER B-BOX ZINC FINGER PROTEIN 22 9 207 - -
Vium6522g00001 245 MobiDBLite consensus disorder prediction 70 90 - -
Vium6522g00001 245 Pfam B-box zinc finger 16 52 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6522g00001 Vium-Chr6522 5452 6531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6522g00001 3 175 C2C2-CO-like Transcription Factor Family AT1G75540 40.331 4.57e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium6522g00001 zf-B_box 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6522g00001 - - vum:124843521 447.588