Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6521g00002 ATGTGGATACGAGGATTCAGATTTTGGATCAAAGGCTGTACTTTGTTGGCGTTAATATCTGCAATTTCCGCTCTGGAACCCGAACTGGGATCGACTCGCGTCGTCTTTCAGACAAAGTATGGGGACATTGAATTTGGTTTCTATCCAACCGTTGCACCCAAAACTGTTGACCACATTTTTAAGCTCGTGCGACTTGGAGGATATAACACTAACCATTTCTTTCGGGTGGATAAGGGATTTGTGGCCCAAGTAGCAGATGTCTCGAATGGGAGATCGGCTCCCATGAATGAGGATCAGAAAAGAGAGTCTGATAAGACTGTTGTTGGTGAATTTAGTGACGTCAAACATGTTCGGGGTATTCTTTCCATGGGAAGGTATGATGATCCAGACAGTGGTTCATCCTCATTTTCAATACTACTTGGAGATGCTCCTCATCTTGATGGAAAGTATGCAATATTTGGAAAAGTTACTAAAGGCGATGAGACATTGACAAAGCTCGAGCAACTACCTACCCGCAAAGAGGGTATATTTGTAATGCCAATGGAACGCATCACTATCTTGTCATCTTATTACTATGACAAAGAGACAGAAAATTGTCAGCAAGACAGATCAGTTTTGAAGCTCAGACTAGCTGCCTCAGCTATTGAAGTTGAACGACAGAGGATGAAATGCTTCCCCTGA 681 0.4288 MWIRGFRFWIKGCTLLALISAISALEPELGSTRVVFQTKYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVSNGRSAPMNEDQKRESDKTVVGEFSDVKHVRGILSMGRYDDPDSGSSSFSILLGDAPHLDGKYAIFGKVTKGDETLTKLEQLPTRKEGIFVMPMERITILSSYYYDKETENCQQDRSVLKLRLAASAIEVERQRMKCFP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6521g00002 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Vium6521g00002 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Vium6521g00002 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Vium6521g00002 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Vium6521g00002 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 187 IPR002130 GO:0000413|GO:0003755
Vium6521g00002 226 CDD cyclophilin 35 188 - -
Vium6521g00002 226 SUPERFAMILY Cyclophilin-like 31 194 IPR029000 -
Vium6521g00002 226 Gene3D - 22 198 IPR029000 -
Vium6521g00002 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 41 191 IPR002130 GO:0000413|GO:0003755
Vium6521g00002 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 15 226 IPR044233 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6521g00002 Vium-Chr6521 4783 10359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6521g00002 34 192 U-box Gene Family AT5G67530 27.160 2.12e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6521g00002 - - gmx:100819238 420.239