Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6519g00004 ATGGAGGACTTATCAGCACCCAAGAGCAAGATCCTGAAAAGTCCAGCACTTGCGCAGTACATCCTTGATACGAGTGCATATCCGAAAGAGCACGAGCAGTTGAAGCAACTCCGAGAGACAACAGTGCAGAAATATGGTTTCAAGAGTTTGATGAATGTGGCTGTGGATGAGGCACAATTCCTTTCTATTCTTCTAAAAATCATCAAGGCCGAGAAAACACTAGAAATTGGAGTTTTCACGGGTTATTCCCTTCTTTCTACTGCTCTGGCTCTTCCTCCTCATGCCAAGATTATAGCAATTGACGTGGATAGAGAAGCATATGAGACTGGATTGCCCTTCATCCAGAAGGCAGGAGTGGAGGACAAAATTGACTTTATCCAAGCAGATGCATTATCCGCCCTGAATGATCTCGTTGAAGGAAACCATGGCGAGTCATTTGACTTCGTATTTGTAGATGCTGACAAGGAAAATATGATAAAGTATCATGAGGTGTTGTTAAAATTGGTGAAGAAGGGTGGAACAATTGCATATGACAACACCTTATGGCTTGGTACAGTGGCTATGTCTGAGGATGAGAAATTGGAAGATAAATTCTGGAAACACAGGAAGCCTACTCTAGAATTCAACAGTTACATAGCAAATGATTGTCGCATAGAATCAACTATTGTTTCCATTGGAGACGGTGTAACTCTTTGTCGACGCATCTGA 708 0.4223 MEDLSAPKSKILKSPALAQYILDTSAYPKEHEQLKQLRETTVQKYGFKSLMNVAVDEAQFLSILLKIIKAEKTLEIGVFTGYSLLSTALALPPHAKIIAIDVDREAYETGLPFIQKAGVEDKIDFIQADALSALNDLVEGNHGESFDFVFVDADKENMIKYHEVLLKLVKKGGTIAYDNTLWLGTVAMSEDEKLEDKFWKHRKPTLEFNSYIANDCRIESTIVSIGDGVTLCRRI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6519g00004 235 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 10 235 IPR002935 GO:0008171
Vium6519g00004 235 PANTHER O-METHYLTRANSFERASE-RELATED 7 235 - -
Vium6519g00004 235 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 14 234 IPR029063 -
Vium6519g00004 235 Pfam O-methyltransferase 23 235 IPR002935 GO:0008171
Vium6519g00004 235 CDD AdoMet_MTases 74 177 - -
Vium6519g00004 235 Gene3D Vaccinia Virus protein VP39 4 235 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6519g00004 Vium-Chr6519 38568 49890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6519g00004 3 235 Monolignol Biosynthesis Gene Families AT1G67990 55.365 3.69e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6519g00004 K13272 K00588 gmx:100813350 355.14