Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6519g00002 ATGGTGAAGTACTCAAGGGAGCCAAACAATCCCACTAAGTCATGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCCTGGTTAAGGCTAAACGGTATTTGGAAGATGTCCTTGCCCACAAACAGGCCATTCCATTCAGGCGTTTCTGCCGTGGTGTTGGAAGGACAGCCCAAGCGAAGAGTAGACACTCAAACGGCCAAGGAAGGTGGCCTGCCAAATCAGCAAAATTCATCCTTGACTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCTCTCTACATTTCCCATATCCAAGTCAATCAAGCGCAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATTGAGTTGATATTGTCGGAAAAGGAAGAACCTGTCAGGAAGGAGCCCGAGACGAAGTTGGCGACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGTGCCTCTTAG 543 0.4843 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETKLATSKKSQALRSGAS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6519g00002 180 MobiDBLite consensus disorder prediction 153 180 - -
Vium6519g00002 180 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vium6519g00002 180 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vium6519g00002 180 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vium6519g00002 180 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vium6519g00002 180 MobiDBLite consensus disorder prediction 153 167 - -
Vium6519g00002 180 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vium6519g00002 180 FunFam 60S ribosomal protein L17 1 175 - -
Vium6519g00002 180 Gene3D Ribosomal protein L22/L17 1 179 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vium6519g00002 180 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vium6519g00002 180 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6519g00002 Vium-Chr6519 4240 7387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6519g00002 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.506 4.84e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6519g00002 K02880 - gmx:100816536 353.984