Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6510g00003 ATGGATTTTGTTCTAAATTACCTTAACACCACTACCATTGGACTTCTTTCTCTAATCCTCTTTTGTTTATTTTTGTACAATCCCTTCAAAAAATTTAAAGGAAAAGAGGCTCCTAGGGTTGCAGGAGCATGGCCAATACTGGGTCATCTTCCACTGTTGAGTGGTCCAAACACACCCCACAGAACTTTGGGTGCTTTGGCTGAAAAATATGGACCCATCTTCACCATCCAACTTGGTTCCAAAAAGGCTGTGGTAATCAACAACTGGGAAATAGCAAAGGAATGCTTCACCACAAACGACACGGTGGTTTCCTCTCGCCCCAAACATGTCGCCATTGAACTCATGGGCTATAACCATGCCATGTTTGGCTTTGCACCCTATGGTCCCTATTGGCGCGAGCTTCGAAAGATTACAATTTTAGAGATCCTTTCCCCTCGTCGAGTGGAACAACTGCAGCATGTTCGTGTCTCCGAAGTTCAAACCTCGATCAGAGAGTTGTATACTCTATGGTGTAGTCAAAAGGGTGAGTCTGGCTATGCCTCGGTTGAGCTGAAGCAATGGTTTTCTCACTTGACATTCAACATGGTTCTTAGAATGCTCGTTGGGAAGAGATATTTTGGTGGTGAAAACGTGGACGATGAGAAGGCACAGAGATGTGTGAGGGCTGTGGAGGAGTTCATGCGTCTGGTGGGTGTGTTCGCAGTGGGAGATGCTATTCCTTGGTTGAGATGGCTTGATTTCGGAGGCCATGAGAAGGCAATGAAAGAAACTGCCAAAGATTTGGATAGTGTTTTAAGTGAGGAGTTAGAGGAACATAGACGAAAGAAGGGTTTCGATAAAAAGGTTGATGAATTTCAGGATTTCATGGATGTCATGATTTCCATCCTTGATGGAAGGACTATTGATGGAGTTGATGCAGATACCGTTATCAAAGCCACCGTGCTGGGCATGATTGCCGGAGGAAATGACACAACTAATACTGTTATTACGTGGGTGATATATTCGATTTTAAGAAATCCTTTGGTATTGGAAAAAGTAAAAGCTGAATTAGACATTCATGTTGGAAAAGAGAGATTGGTGAGTGAGGATGATATAAGTAAGTTAAAATATCTTCAAGCTACAGTCAAAGAGACTTTAAGATTGCATCCTCCAGCTCCTCTCTTGCCACCTCGTGAATTCATAGAGAATTGCACTTTAAGTGGTTATAACGTAGAAAAAGGAACTCGTCTATTCACAAATGTTTGGAAAATTCAAACAGATAGCAATGTTTGGGAAGATCCATTGGCGTTCAAACCAGAAAGGTTTTTAACAACTCATAAAGATTTTGACATCAGAGGTCATCATTTTGAGTTATTACCATTTGGATGTGGTAGAAGAATGTGTCCTGGAATATCCTTTAGCCTTCAAATGGTGCATTTCATTCTTGCTACTTTTTTGCATTCTTTCAAAATTTTAAATTCATCAGCTTATCCTGTAGATATGACTAAAACCTCTCAGTCAGCCAACACTAGAGCCATTTCTCTTGATGTTCTTATTAAACCACGTTTATCTTTTACTTGTTATGAAAATAACTTGTCTCATTTTCATTAG 1590 0.405 MDFVLNYLNTTTIGLLSLILFCLFLYNPFKKFKGKEAPRVAGAWPILGHLPLLSGPNTPHRTLGALAEKYGPIFTIQLGSKKAVVINNWEIAKECFTTNDTVVSSRPKHVAIELMGYNHAMFGFAPYGPYWRELRKITILEILSPRRVEQLQHVRVSEVQTSIRELYTLWCSQKGESGYASVELKQWFSHLTFNMVLRMLVGKRYFGGENVDDEKAQRCVRAVEEFMRLVGVFAVGDAIPWLRWLDFGGHEKAMKETAKDLDSVLSEELEEHRRKKGFDKKVDEFQDFMDVMISILDGRTIDGVDADTVIKATVLGMIAGGNDTTNTVITWVIYSILRNPLVLEKVKAELDIHVGKERLVSEDDISKLKYLQATVKETLRLHPPAPLLPPREFIENCTLSGYNVEKGTRLFTNVWKIQTDSNVWEDPLAFKPERFLTTHKDFDIRGHHFELLPFGCGRRMCPGISFSLQMVHFILATFLHSFKILNSSAYPVDMTKTSQSANTRAISLDVLIKPRLSFTCYENNLSHFH 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6510g00003 529 PANTHER CYTOCHROME P450 82C3-RELATED 18 521 - -
Vium6510g00003 529 SUPERFAMILY Cytochrome P450 43 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Vium6510g00003 529 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 Gene3D Cytochrome P450 31 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 FunFam Cytochrome P450 82C4 28 513 - -
Vium6510g00003 529 Pfam Cytochrome P450 38 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00003 529 CDD CYP82 71 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6510g00003 Vium-Chr6510 36729 39532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6510g00003 8 516 Cytochrome P450 AT4G31940 46.821 1.16e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6510g00003 - - vum:124820532 853.588