Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6510g00002 ATGGATCTAAATGTCTCTGCGATTGGACTTGTTTCTCTAACCCTCTTCTGTTTCTTTTTCTGTCGTTTCTTCAAATTTTCCAAAGGAAAAGCGGCTCCCACAGTTGCAGGTGCATGGCCAATACTTGGTCATCTTCCATTGTTGAATGATTCGAAGGCACCCCATAGAACTTTGGGTGCTTTGGCTGACAAATATGGACCCATTTTCACCGTCCAACTTGGTTCAAAAAAGACTTTGGTGATCAGCAACTGGGAAATGGCAAAGGAATGCTTCACCACAAACGACGCGGTGGTTTCCTCTCGCCCCAAGCTTGCCGCCGCCGAACACATGACCTACAACAAAGCCATGTTCTCCGTAGCACCATGTGGTCCCTATTGGCGAACAACTAGAAAGATTGCTACTTCAGAGATTCTCTCCCCTCACCGAGTGAAGCAGCTACGTCATGTTTTTGAGTCAGAAGTTCAAGGTTCCATCAAGGAGCTCTTTAACTTTTGGTGTAGCAACAAGAACGAGTGTGGCTATGCCTTGGTGGAGTTGAAGCAATGGTTTTCTCATTTGATATTCAACGTTGTTCTTCAAATGGTTTTGGGAAAGCGATATTTTAGTTTAGGAACCGTGGATGATGAGAAGGCAGGAAGATGTGTGAAGGCTGTGAAGGAGTTCATGCGTCTTTTCGGGGTGTTCACAGTGGGAGATGCTGTTCCTTGGTTGAGATGGTTTGATTTTGGAGGCCATGAGAAGGCCATGAAAGAAACTGCCAAGGAAATGGATAGTCTTGTAAGTGAGTGGTTAGAGGAGCATAGACAAAACAAGGCTTTGGGTGGAAAGGTTGATGGATTTCAAGATTTCATGGACGTCATGATTTCAATGCTTGATGGACAAACGAATAATGGGGTCGATGCAGATACCATGATCAAATCCACTGTACTGACAATAATTGCAGGAGCAACTGACACAATCAGTGCTACTCTTACCTGGGCAATGTGTTTGATATTAAGAAACCCTAATGTATTGGAAAAAGTTAAAGAAGAGCTTCACATAGTTGGTAAAGAGAAATGGCTAAGTGAGAATGACATTACTAAGTTAATATACCTTCAAGCTACAGTCAAAGAAACGTTAAGACTGTACCCTCCAGCTCCTCTTTCTGCACCTCATGAATTCACAGAGGATTGTACTATAAATGGCTACAATGTCACAAAGGGAACCCGTTTGATTACAAATCTTTGGAAGATCCACACAGATGAATATGTTTGGTCAGATCCATTAGAGTTTAAACCAGAAAGGTTTCTCACAACTCATAAAGATATTGACATGAAGGGTCATCATTTTGAACTGTTACCATTTGGAGGAGGTAGAAGGATTTGTCCTGGAATATCTTATGGTCTTCAAGTTGTTCATTTAGTTCTTGCTAGTTTTTTACAACATTTCGAAATCTTAAACCCGTTAACTGAAGCTCTTAATATGTCTGAAACTTTTGGATTAACCAACACTAAAACCACTCCACTTGATATTCTGGTTAAACCATGTCTGTCTTTTAATTGTTATGAAAGAGGTCTTTGCACAAAACTATAA 1572 0.4109 MDLNVSAIGLVSLTLFCFFFCRFFKFSKGKAAPTVAGAWPILGHLPLLNDSKAPHRTLGALADKYGPIFTVQLGSKKTLVISNWEMAKECFTTNDAVVSSRPKLAAAEHMTYNKAMFSVAPCGPYWRTTRKIATSEILSPHRVKQLRHVFESEVQGSIKELFNFWCSNKNECGYALVELKQWFSHLIFNVVLQMVLGKRYFSLGTVDDEKAGRCVKAVKEFMRLFGVFTVGDAVPWLRWFDFGGHEKAMKETAKEMDSLVSEWLEEHRQNKALGGKVDGFQDFMDVMISMLDGQTNNGVDADTMIKSTVLTIIAGATDTISATLTWAMCLILRNPNVLEKVKEELHIVGKEKWLSENDITKLIYLQATVKETLRLYPPAPLSAPHEFTEDCTINGYNVTKGTRLITNLWKIHTDEYVWSDPLEFKPERFLTTHKDIDMKGHHFELLPFGGGRRICPGISYGLQVVHLVLASFLQHFEILNPLTEALNMSETFGLTNTKTTPLDILVKPCLSFNCYERGLCTKL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6510g00002 523 SUPERFAMILY Cytochrome P450 38 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Vium6510g00002 523 FunFam Cytochrome P450 82C4 24 507 - -
Vium6510g00002 523 CDD CYP82 66 509 - -
Vium6510g00002 523 Pfam Cytochrome P450 36 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PANTHER CYTOCHROME P450 82C3-RELATED 15 515 - -
Vium6510g00002 523 Gene3D Cytochrome P450 25 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6510g00002 523 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6510g00002 Vium-Chr6510 25008 26702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6510g00002 32 508 Cytochrome P450 AT4G31940 47.325 1.37e-161 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6510g00002 - - gmx:100803451 749.969