Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6505g00003 ATGAAACCTTTTCTTCTCTTTCTCACATTCTTCTTCCTCTGCCAAACACACCCACTCCCAGTTCTCTCTGCCACAACCCTGCCTCTCCAACTCATCTCCCTCCTCTCAGTTAAATCATCCCTCCAAGACCCTCTCAATAACCTCCACGACTGGGATCCCTCCTCCACCTTCTCCAACTCCAGTCCCCAACACCCAATATGGTGTTCATGGAGAGGCATCACATGCCACTCCAAAACATCACAGATCACTACCCTCGACCTCTCCCACCTCAATCTCTCCGGCTCAATCTCACCCCAAATCCGACACCTCTCCACCTTAAACCACCTTAACCTCAGTGGAAATGACTTCAGCGGGAGTTTCCAATTCGCCATTTTTGAACTAGCAGAACTCAGAACTCTAGACATCAGCCACAACTACTTCAACTCAACCTTCCCACCCGGCACATCAAAGCTCAAGTTCCTCAGACACTTCAACGCCTACAGCAACAGCTTCACCGGACCCCTCCCCCTAGAGTTAACCAGCCTTCGTTTTCTGGAACACCTGAACCTCGGCGGAAGCTACTTCAGTGACAGGATTCCACCAAGCTACGGCACTTTCCCAAGACTCAAGTTTCTAGACTTAGCCGGGAACGCATTGGGAGGTTCGCTTCCACCCCAATTAGGCCACTTGACTGAACTGGAACACTTGGAAATTGGATACAACAATTTCTCAGGAACACTACCTTCGGAACTGTCATTGCTCTCTAATCTCAAATACTTGGACATCTCAACCGCCAACATCTCAGGGAACGTGATTCCAGAGCTGGGAGACCTCACCAACCTGGAGACACTTTTGCTGTTCAAGAACAGGTTAACAGGAGAAATCCCACCAACCATAGGAAGATTGAAGTTTCTAAAAAGCCTTGACCTCTCAGATAACGAACTCACGGGGCCAATCCCCACCCAAGTCACCATGCTAACGGAACTAACCACGCTCAACCTGATGGAAAACAACCTGACCGGAGAAATACCACAGGGAATTGGAGACCTACCAAAGCTTGAGATTCTGTTCCTCTTCAACAACTCACTCACCGGAACCCTCCCTCAGCAACTTGGTTCCAACGGGTTACTACTGAAACTAGACGTTTCCACAAACTCACTCGAAGGTCCAATCCCTGAAAATGTCTGCAAAGGTAACAGGCTCGTGAAACTCATACTCTTTCTCAACAAGTTCAGTCATACCCTTCCACCATCTCTTGGGAGCTGCACCTCACTCGCTAGGGTTCGAATCCAAAACAATTTCCTCAACGGTTCAATCCCCGAAGGCCTCACGCTCCTCCCTAACCTTACATTCCTAGATATCAGCAGCAACAACTTTCAGGGTCCAATTCCGGAACACTTAGGTAACTTGCAGTACTTCAACATCTCCGGAAACTCTTTCGGAACCTCCTTACCTGCGTCTATTTGGAATGCAACTAATCTCGCGATCTTCTCCGCGGCTTCGTCGAACATCACCGGTCAAATTCCAGATTTCATTGGGTGTCAGCAACTGTATAAGCTCGAATTGCAGGGAAATTTCATCAACGGTACGATTCCATGGGACATTGGACACTGCCAGAAGCTGATTTTACTCAATCTGAGTCGAAACTCACTCACCGGAATCATTCCCTGGGAAATCTCCACTCTCCCTTCCATCACCGACGTTGATCTCTCTCACAATTCCCTCACCGGAACCATTCCGTCGAACTTCAACAACTGCTCCACTCTCGAGAATTTCAACGTCAGTTTCAACTCCCTCACCGGTCCAATCCCATCGTCCGGAATCTTCCCGAACCTCCATCCTTCCTCCTACTCCGGGAACCAGGGCCTCTGCGGCGGGGTGTTGGCCAAACCCTGCGCTGCCGACGCCCTCGCCGCTACCGCCGATGATCAGGTCGACGTCCGCCGCCAGCAGCCGAAGCGAACAGCCGGTGCAATCGTGTGGATCGTGGCCGCCGCGTTCGGCATCGGGCTCTTCGTGCTGGTTGCCGGGACGCGGTGCTTCCATGCGAACTACAACCGGCGGTTCGGAGAGGAGGTCGGGCCGTGGAAGCTAACGGCGTTCCAGCGGCTGAATTTCACGGCGGACGACGTGCTGGAGTGCTTGTCGGTGTCCGATAAGATATTAGGAATGGGATCGACGGGAACAGTTTACCGCGCCGAAATGACAGGTGGAGATATCATAGCGGTTAAGAAGCTTTGGGGAAAACAAAAGGAGAATATCCGACGGAGGAGAGGCGTTCTGGCAGAGGTGGAGGTGTTGGGAAACGTGAGGCACAGGAATATCGTGAGGTTGTTAGGGTGCTGCAGCAATAAGGAGTGCACCATGCTGCTCTACGAGTACATGCCCAACGGCAACTTGGATGATTTATTGCATGCCAAAAACAAAGGTGATAATCTCGTCGCTGATTGGTTCACAAGGTACAAGATCGCCTTGGGCGTTGCTCAGGGAATCTCCTACCTCCACCACGACTGCGACCCCGTCATCGTCCATCGCGATCTCAAACCCAGTAACATTCTACTGGACGCCGAGATGGAGGCAAGAGTCGCCGATTTCGGCGTCGCCAAGTTGATTCAGACCGACGAATCCATGTCCGTCATTGCCGGATCCTACGGCTACATTGCTCCAGGTGGTCCATTGGGTGTGTGA 2667 0.5156 MKPFLLFLTFFFLCQTHPLPVLSATTLPLQLISLLSVKSSLQDPLNNLHDWDPSSTFSNSSPQHPIWCSWRGITCHSKTSQITTLDLSHLNLSGSISPQIRHLSTLNHLNLSGNDFSGSFQFAIFELAELRTLDISHNYFNSTFPPGTSKLKFLRHFNAYSNSFTGPLPLELTSLRFLEHLNLGGSYFSDRIPPSYGTFPRLKFLDLAGNALGGSLPPQLGHLTELEHLEIGYNNFSGTLPSELSLLSNLKYLDISTANISGNVIPELGDLTNLETLLLFKNRLTGEIPPTIGRLKFLKSLDLSDNELTGPIPTQVTMLTELTTLNLMENNLTGEIPQGIGDLPKLEILFLFNNSLTGTLPQQLGSNGLLLKLDVSTNSLEGPIPENVCKGNRLVKLILFLNKFSHTLPPSLGSCTSLARVRIQNNFLNGSIPEGLTLLPNLTFLDISSNNFQGPIPEHLGNLQYFNISGNSFGTSLPASIWNATNLAIFSAASSNITGQIPDFIGCQQLYKLELQGNFINGTIPWDIGHCQKLILLNLSRNSLTGIIPWEISTLPSITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSSGIFPNLHPSSYSGNQGLCGGVLAKPCAADALAATADDQVDVRRQQPKRTAGAIVWIVAAAFGIGLFVLVAGTRCFHANYNRRFGEEVGPWKLTAFQRLNFTADDVLECLSVSDKILGMGSTGTVYRAEMTGGDIIAVKKLWGKQKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDLLHAKNKGDNLVADWFTRYKIALGVAQGISYLHHDCDPVIVHRDLKPSNILLDAEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPGGPLGV 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6505g00003 888 Pfam Protein kinase domain 712 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6505g00003 888 SMART LRR_typ_2 223 247 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 199 222 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 555 578 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 319 342 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 127 151 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 271 295 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 460 484 IPR003591 -
Vium6505g00003 888 SMART LRR_typ_2 343 367 IPR003591 -
Vium6505g00003 888 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Vium6505g00003 888 Pfam Leucine rich repeat N-terminal domain 30 75 IPR013210 -
Vium6505g00003 888 FunFam Os07g0541700 protein 788 876 - -
Vium6505g00003 888 SMART serkin_6 709 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6505g00003 888 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 678 787 - -
Vium6505g00003 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Vium6505g00003 888 Gene3D Transferase(Phosphotransferase) domain 1 703 884 - -
Vium6505g00003 888 Pfam Leucine Rich repeat 297 310 IPR001611 GO:0005515
Vium6505g00003 888 PANTHER RECEPTOR-LIKE PROTEIN 55 374 882 - -
Vium6505g00003 888 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Vium6505g00003 888 Gene3D Ribonuclease Inhibitor 507 627 IPR032675 -
Vium6505g00003 888 Pfam Leucine Rich Repeat 441 463 IPR001611 GO:0005515
Vium6505g00003 888 Pfam Leucine rich repeat 509 568 IPR001611 GO:0005515
Vium6505g00003 888 Gene3D Ribonuclease Inhibitor 287 389 IPR032675 -
Vium6505g00003 888 ProSiteProfiles Protein kinase domain profile. 709 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6505g00003 888 FunFam Leucine-rich repeat receptor-like protein kinase TDR isoform A 85 339 - -
Vium6505g00003 888 Gene3D Ribonuclease Inhibitor 390 461 IPR032675 -
Vium6505g00003 888 Gene3D Ribonuclease Inhibitor 462 506 IPR032675 -
Vium6505g00003 888 Gene3D Ribonuclease Inhibitor 30 185 IPR032675 -
Vium6505g00003 888 SUPERFAMILY RNI-like 85 405 - -
Vium6505g00003 888 SUPERFAMILY L domain-like 313 617 - -
Vium6505g00003 888 FunFam LRR receptor-like serine/threonine-protein kinase EFR 340 631 - -
Vium6505g00003 888 SUPERFAMILY Protein kinase-like (PK-like) 712 882 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6505g00003 Vium-Chr6505 5804 11853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6505g00003 30 882 Receptor kinase-like Gene Family AT5G65700 42.610 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium6505g00003 Pkinase 4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6505g00003 - - gmx:100809695 1579.3