Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6505g00001 ATGAAACGGGGAAGAGGAGAGAGCATGGGAGAATCCAGTTCTAGGGTTTCTCCAACTCTTCAGAACCCCACAGCAGGCATCATCAAGCGACTTCGTCTCGAGAACTTCATGTGTCACTCCAAACACGAGACTGAGTTCGGAAACCATGTGAATTTCATCACGGGTCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGAGCATCCACTTTGAAGGATTTCATTAAAAATGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCGTGTTATCAATGTAGAACGTCGGATATCTGAATCCGCAAGTTCTACTACATTAAAAGATCACCTAGGTGTGCTTCCCTATGTTTCTTGTTTTTTCCAGTACTAA 453 0.4349 MKRGRGESMGESSSRVSPTLQNPTAGIIKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKNGASNAVIQVEIQNEGEDAFKPEIYGRVINVERRISESASSTTLKDHLGVLPYVSCFFQY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6505g00001 150 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 19 135 - -
Vium6505g00001 150 MobiDBLite consensus disorder prediction 1 21 - -
Vium6505g00001 150 Pfam AAA domain 30 135 IPR038729 GO:0006302|GO:0016887
Vium6505g00001 150 Gene3D - 27 140 IPR027417 -
Vium6505g00001 150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 140 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6505g00001 9 139 Structural Maintenance of Chromosomes family AT5G61460 68.421 4.75e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6505g00001 K22804 - vum:124843476 292.352