Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6500g00001 TATTCACAGTTTTTCTTTGACTCTTTCTTGGCCTACTTATTTGACAGTTTCTTTCTTCCTTTCACCATCATTCTCTTTCAGGGTAATTTGGAAGATGGAACAGAAGTTGCTGTCAAAAGACTCTCTAAAGCATCTAATCAAGGTTTGGAGGAGTTTAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTCTTGGGATGCTGCATTGAGGAAAATGAAAAGCTGCTTGTGTACGAGTACATGCCAAATTCTAGCCTTGCCTCTCACCTGTTTAATGAGGAAAAAAGAAAGCAACTAGATTGGAAGTTAAGACTGAGCATTATCAATGGAATTGCAAAAGGACTTCTGTATCTACATGAAGACTCCAGACTTAGAATAATACACAGAGACCTAAAAGCCAGCAATGTACTTCTGGATCAAGAGATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGAAAAAGGCCAGAGTCAAGAAAATACACAGAGAGTTATGGGCACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTGTATTCAGTGAAATCTGATGTTTTCGCTTTTGGAGTTCTTCTACTAGAAATCATACGTGGGAAAAGGAACAGTGGATTCCATCTTTCAGAACATGGTCAAAGCCTTCTTGTATATAGTTGGAGACTTTGGTGTGAAGGAAAAAGCTTGGAAATGTTGGATCCAATGCTGGAAAAGATACACAAAGCCAGTGAAGTTATGAAATGCATACACATTGGTTTATTGTGTGTTCAAGAAGATGCAGCTGATAGACCAACCATGTCCACAGTTGTTGTCATGATGGCAAGTGACGCAATGGCCCTTCCCAATCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATGAAAGAAGAAGAATCAACATCA 930 0.3882 YSQFFFDSFLAYLFDSFFLPFTIILFQGNLEDGTEVAVKRLSKASNQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSSLASHLFNEEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRIIHRDLKASNVLLDQEMNPKISDFGLARTFEKGQSQENTQRVMGTYGYMAPEYAMEGLYSVKSDVFAFGVLLLEIIRGKRNSGFHLSEHGQSLLVYSWRLWCEGKSLEMLDPMLEKIHKASEVMKCIHIGLLCVQEDAADRPTMSTVVVMMASDAMALPNPNHPAFSVGRKMKEEESTS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6500g00001 310 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 305 - -
Vium6500g00001 310 FunFam Uncharacterized protein 21 86 - -
Vium6500g00001 310 CDD STKc_IRAK 24 282 - -
Vium6500g00001 310 SUPERFAMILY Protein kinase-like (PK-like) 30 295 IPR011009 -
Vium6500g00001 310 Gene3D Phosphorylase Kinase; domain 1 20 86 - -
Vium6500g00001 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium6500g00001 310 ProSiteProfiles Protein kinase domain profile. 1 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6500g00001 310 Pfam Protein tyrosine and serine/threonine kinase 31 280 IPR001245 GO:0004672|GO:0006468
Vium6500g00001 310 Gene3D Transferase(Phosphotransferase) domain 1 87 290 - -
Vium6500g00001 310 PIRSF ILK 26 289 - -
Vium6500g00001 310 SMART serkin_6 21 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6500g00001 310 FunFam Liguleless narrow1 87 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6500g00001 Vium-Chr6500 6 1356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6500g00001 25 299 Receptor kinase-like Gene Family AT4G23230 58.909 2.90e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium6500g00001 PK_Tyr_Ser-Thr 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6500g00001 - - mtr:25490357 478.789