Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium64g00018 ATGCTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGAGCAAGGGGAGATGGAGAGCTTCTCCATTGGAACTGATGACTTTGCTGACTTATCAGAAGGAAACTTGCTTGAAAGCATCAACTTTGATGACCTCTTCATGGGAATCAACGATGATGAAGATGTCTTGCCAGATCTGGAGATGGACCCTGAAATGCTGGCTGAGTTTTCCCTCAGCGAGGAATCGGAGAAAGTCTCGTCAGTTTCAGTGGTAAATAACAAATCTGATGACAGGAATGAGAATAATATAGTTACTACCGAGAAACAAGATGAGGTTATAGCAGCCAATTTTTGTTCAGATTCTGGTTCCAATTCCGGGTCTAGCAGAGGGGAAGAGATAGCAAGCAAAAGCGAGGAATCAATTCATTCAGTGGTGGTGAATCCATCCCCTAAGGAAAGTAAGAAAGGAAGAAAATCATCAACGCATTCAAGGAATAATCCGCTAGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTTGTGCAAGCTGTGGAACAGCTAGGTGTGGACAAAGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCCCATAGGAAGCATTTGCTAGCACGTGAAGCTGAAGCAGCAAGGTTGAGTCAAAGGAAACAATTCATGGGTGCAGCAAGCGTAGGTAGAGGAGGAGGAGGAAGCAAGAGAGACGTGAACCCTTGGCTTGCACCTACCATGGGTTTCCCTCACATGACACCAATGCACCATTTCAGACCTTTCCATGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTCCCATATTCACCGTCCCCGCCGGCATGGCCACCGCGAACGGCTCCCTCTCCGCCGCCTCCGGACCCTCTTTATTGGCACCAACATCAACGGGCTCCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACCGCCTCTGACAAGCACGAGATTTGGGTCTCAAACTGTTCCGGGCATCCCTCCACACCATACAATGTTCCAAATAGTAGATCCAGGCATTGGCATCCCAGCCACCCAACCACCACCTCGACCCCTCCTCGATTTTCATCCGTCAAAGGAGAGCATAGATGCAGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGCCTTAAAGGTCCAGCCCTTGATGGTGTAATGGGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCATCTTGTGCTTGA 1314 0.4848 MLAVSPLRSTRDEEQGEMESFSIGTDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDPEMLAEFSLSEESEKVSSVSVVNNKSDDRNENNIVTTEKQDEVIAANFCSDSGSNSGSSRGEEIASKSEESIHSVVVNPSPKESKKGRKSSTHSRNNPLGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARLSQRKQFMGAASVGRGGGGSKRDVNPWLAPTMGFPHMTPMHHFRPFHVWGHHTMDQSFMHMWPKHLPYSPSPPAWPPRTAPSPPPPDPLYWHQHQRAPNAPTPGTPCFPPPLTSTRFGSQTVPGIPPHHTMFQIVDPGIGIPATQPPPRPLLDFHPSKESIDAAISDVLSKPWLPLPLGLKGPALDGVMGELQRQGIPKIPPSCA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium64g00018 437 MobiDBLite consensus disorder prediction 1 26 - -
Vium64g00018 437 MobiDBLite consensus disorder prediction 68 166 - -
Vium64g00018 437 MobiDBLite consensus disorder prediction 109 124 - -
Vium64g00018 437 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Vium64g00018 437 MobiDBLite consensus disorder prediction 73 92 - -
Vium64g00018 437 FunFam Two-component response regulator 162 224 - -
Vium64g00018 437 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 436 IPR044825 GO:0003700|GO:0045893
Vium64g00018 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Vium64g00018 437 Gene3D - 162 223 - -
Vium64g00018 437 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Vium64g00018 437 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium64g00018 Vium-Chr64 46621 50442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium64g00018 27 332 G2-like Transcription Factor Family AT5G44190 41.824 7.13e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium64g00018 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium64g00018 - - gmx:100790591 651.744