Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium64g00016 ATGGCGTTGTTATTCAAGGATCCGTCGAAGCTTTCGGCGTATCGAGACCGAAGATTTCCCGGAACGCAAGAGGATTTTGAGCATGCCCTTCAGACTTCATCCACGGTTTACGTTGGGAACATGTCCTTTTACACAACGGAGGAGCAAGTTTACGAACTCTTCTCTCGCGCTGGGGAAATCAAGAAGATCATTATGGGTTTGGACAAGAACACCAAAACACCCTGTGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCTTATTCGTGTTGATTTTGATTGGGGGTTCCAGGATGGAAGACAATGGGGTCGTGGGAGGAGTGGTGGCCAGGTCCGGGACGAGTATCGTACTGATTATGATCCTGGTAGAGGAGGTTATGGGAAGCTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGTTCCTTTCCACCAGTTATTCCTAGTTCCTATGGTAGACACGGTGGAGGTCATGGGCATGGACACGGTCATGGTGGTTCTCATCGGCACGGTAGAGATTACTATAGAAAGAGACACCGAGATGATGATCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCACGATTCTCGGAGGAACACTGATCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGAGGAGGAAGATGATAGAAAAAGACGGGCTTAA 774 0.4664 MALLFKDPSKLSAYRDRRFPGTQEDFEHALQTSSTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDYYRKRHRDDDRHTHESSKRTSDHDSRRNTDHESRPEKNPRFRESGDSDDEEEDDRKRRA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium64g00016 257 MobiDBLite consensus disorder prediction 120 140 - -
Vium64g00016 257 SUPERFAMILY RNA-binding domain, RBD 23 144 IPR035979 GO:0003676
Vium64g00016 257 CDD RRM_NCBP2 36 113 IPR034148 -
Vium64g00016 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Vium64g00016 257 Gene3D - 5 150 IPR012677 -
Vium64g00016 257 MobiDBLite consensus disorder prediction 163 257 - -
Vium64g00016 257 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Vium64g00016 257 MobiDBLite consensus disorder prediction 124 138 - -
Vium64g00016 257 MobiDBLite consensus disorder prediction 201 257 - -
Vium64g00016 257 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 255 IPR027157 GO:0000339|GO:0005846|GO:0045292
Vium64g00016 257 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vium64g00016 257 MobiDBLite consensus disorder prediction 182 200 - -
Vium64g00016 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium64g00016 Vium-Chr64 30757 34396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium64g00016 34 109 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 8.19e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium64g00016 K12883 - gmx:100776217 404.445