Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6485g00004 ATGTGTTTTCATTGTTTTATAGGTTCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACCCTTCCGCGTGAAGGGGTGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGCTCGAGGCATCTATGAACCAGGGGTTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTGTGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTACTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGACGATCCTCTACCAGAACCTCCAAGATGTACTGTTCATTCGTTCTGCAAGACTCTCACTGCTTCTGACACTAGTACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCTCTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAGGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTTGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATCGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCGTCTTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACTCCTCCCACAAACTCCCAGCCTTCCCAAAGAAACAAGAGATCACGGCCTCCCATTCTTCCTTCAACATTGGCTGATTCTTCTCTGCAAGGTGTAAGGAAATCACCAGTTGATTCTGCACCATTCTCTTATCGTGACCATCAACACGGACGAGACATCTATCCACCGGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAACTGTTCTGCTTCCAACAAATCAATATATTGGTCTAGTAGGACAGAAAACTCTACAGAGTCGTTTTTACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGGAATGGGACTGCAAATGGGTGTAGGCTCTTTGGGATTCAGTTACTTGATAATGCTAATGGGGAAGAAAGCCTACCAATGGTCACTTTGTCAGGAAGGTTGGGTGATGATGTCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCGGAACCGTCAAATATTAATCGATCCGATATTCCTTCGGTAAGTTGTGATGTTGAAAAATCATGCCTGCGGTCTCCCCATGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCGGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTTTGTGGATCCCCAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGATATGATGATGGTTGGGGATGACCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCCGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATCAGTGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1998 0.4419 MCFHCFIGSTNDALYKELWHACAGPLVTLPREGVRVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQGNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPPILPSTLADSSLQGVRKSPVDSAPFSYRDHQHGRDIYPPAKFNSTATGFLGFGGNCSASNKSIYWSSRTENSTESFLPVALKESGEKRNGTANGCRLFGIQLLDNANGEESLPMVTLSGRLGDDVPLPSLDAESDQHSEPSNINRSDIPSVSCDVEKSCLRSPHESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSPKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDSEAVVNPEDQSSIVGSGC 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6485g00004 665 SUPERFAMILY DNA-binding pseudobarrel domain 108 248 IPR015300 -
Vium6485g00004 665 FunFam Auxin response factor 536 630 - -
Vium6485g00004 665 ProSiteProfiles PB1 domain profile. 541 634 IPR000270 GO:0005515
Vium6485g00004 665 Pfam B3 DNA binding domain 119 219 IPR003340 GO:0003677
Vium6485g00004 665 MobiDBLite consensus disorder prediction 642 665 - -
Vium6485g00004 665 Gene3D - 282 354 - -
Vium6485g00004 665 Pfam Auxin response factor 245 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium6485g00004 665 MobiDBLite consensus disorder prediction 651 665 - -
Vium6485g00004 665 FunFam Auxin response factor 282 354 - -
Vium6485g00004 665 SMART B3_2 119 221 IPR003340 GO:0003677
Vium6485g00004 665 Pfam AUX/IAA family 539 631 IPR033389 -
Vium6485g00004 665 Gene3D - 536 630 - -
Vium6485g00004 665 Gene3D - 116 221 IPR015300 -
Vium6485g00004 665 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Vium6485g00004 665 CDD B3_DNA 117 219 IPR003340 GO:0003677
Vium6485g00004 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 630 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium6485g00004 665 MobiDBLite consensus disorder prediction 347 396 - -
Vium6485g00004 665 MobiDBLite consensus disorder prediction 350 386 - -
Vium6485g00004 665 MobiDBLite consensus disorder prediction 494 516 - -
Vium6485g00004 665 FunFam Auxin response factor 117 221 - -
Vium6485g00004 665 SUPERFAMILY CAD & PB1 domains 542 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6485g00004 Vium-Chr6485 6253 11522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6485g00004 8 659 B3 DNA Binding Superfamily AT1G59750 71.775 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium6485g00004 AUX_IAA 4.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6485g00004 K14486 - gmx:100793224 1265.37