Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6485g00003 ATGGCTTCCGCTGCGCCAGGTTCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACCCTTCCGCGTGAAGGGGTGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGCTCGAGGCATCTATGAACCAGGGGTTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTGTGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTACTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGACGATCCTCTACCAGAACCTCCAAGATGTACTGTTCATTCGTTCTGCAAGACTCTCACTGCTTCTGACACTAGTACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCTCTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAGGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTTGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATCGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCGTCTTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACTCCTCCCACAAACTCCCAGCCTTCCCAAAGAAACAAGAGATCACGGCCTCCCATTCTTCCTTCAACATTGGCTGATTCTTCTCTGCAAGGTGTAAGGAAATCACCAGTTGATTCTGCACCATTCTCTTATCGTGACCATCAACACGGACGAGACATCTATCCACCGGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAACTGTTCTGCTTCCAACAAATCAATATATTGGTCTAGTAGGACAGAAAACTCTACAGAGTCGTTTTTACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGGAATGGGACTGCAAATGGGTGTAGGCTCTTTGGGATTCAGTTACTTGATAATGCTAATGGGGAAGAAAGCCTACCAATGGTCACTTTGTCAGGAAGGTTGGGTGATGATGTCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCGGAACCGTCAAATATTAATCGATCCGATATTCCTTCGGTAAGTTGTGATGTTGAAAAATCATGCCTGCGGTCTCCCCATGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCGGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTTTGTGGATCCCCAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGATATGATGATGGTTGGGGATGACCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCCGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATCAGTGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1995 0.4466 MASAAPGSTNDALYKELWHACAGPLVTLPREGVRVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQGNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPPILPSTLADSSLQGVRKSPVDSAPFSYRDHQHGRDIYPPAKFNSTATGFLGFGGNCSASNKSIYWSSRTENSTESFLPVALKESGEKRNGTANGCRLFGIQLLDNANGEESLPMVTLSGRLGDDVPLPSLDAESDQHSEPSNINRSDIPSVSCDVEKSCLRSPHESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSPKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDSEAVVNPEDQSSIVGSGC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6485g00003 664 MobiDBLite consensus disorder prediction 493 515 - -
Vium6485g00003 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Vium6485g00003 664 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Vium6485g00003 664 Gene3D - 281 353 - -
Vium6485g00003 664 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium6485g00003 664 FunFam Auxin response factor 116 220 - -
Vium6485g00003 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Vium6485g00003 664 MobiDBLite consensus disorder prediction 346 395 - -
Vium6485g00003 664 MobiDBLite consensus disorder prediction 349 385 - -
Vium6485g00003 664 FunFam Auxin response factor 535 629 - -
Vium6485g00003 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium6485g00003 664 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Vium6485g00003 664 SMART B3_2 118 220 IPR003340 GO:0003677
Vium6485g00003 664 MobiDBLite consensus disorder prediction 641 664 - -
Vium6485g00003 664 FunFam Auxin response factor 281 353 - -
Vium6485g00003 664 MobiDBLite consensus disorder prediction 650 664 - -
Vium6485g00003 664 Pfam AUX/IAA family 538 630 IPR033389 -
Vium6485g00003 664 Gene3D - 535 629 - -
Vium6485g00003 664 Gene3D - 115 220 IPR015300 -
Vium6485g00003 664 SUPERFAMILY CAD & PB1 domains 541 617 - -
Vium6485g00003 664 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6485g00003 Vium-Chr6485 6253 12380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6485g00003 2 658 B3 DNA Binding Superfamily AT1G59750 71.429 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium6485g00003 AUX_IAA 4.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6485g00003 K14486 - gmx:100793224 1276.15