Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6485g00001 ATGGTACTAATATTGTTGTCTGTTTATCCTTGTCAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTGTATGTACAATACAAAGCTTTGGATTCTGCGCTGCTCGCAGCAAACTTAATAAATCGTCACGATTTTACCGGAAAACGGGTAACTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCGGGTTTCAAGACTTGTTCTCGCGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAATTTTGGGTAGAAAAGATGATTGCTTTATTTGGTTATTCTGATGATTATGAGACTTCAAGGGAGCAGGGAAATTTTAGTTTGTCAAAAACAGATTCTGACAGGTACCACTGTAGAAGGTCAAGATCCAGAGAGACGGATCAGATAAGTTGTGGTCATTCTGGTAGAAGAAAACATGAAGATGAAAGAAAGCAAAGAACTCCGTATGAGGATCGGAATGCTAGCTTAAAAAACACTCATAAAAGAAAATCCAGAGGCAGAACTCCTGATACTGATTCTGACAGAGAATGGTTAGAAAAGGAGGAAATTAGGGAAAGACGCCATGAATACACTAGGAATGGCTCATTTAATAAGAACAGGGATGAAAATAGCAGAAGCCACGAAGAGGATTCTGATATGGATTGTGATACTAGGGACAATGAAAAGCAGCATGGAAGAAACCCAAGAAAGTGCGACAAAGACATCAGGGTCTGGATTAATGAGGCTGCTGGTTTGGATGGGGACAGAGATGTGAGAAAGCACCGTATTAGGGAAAGCTCAGGACATCAGAGTGGTGACGCTTCTGAATCCAACAAAGATTTGTTTGGTAGAGTGGAGATGGAAACACTACATGATCACTTTAGGAAAACATATAGTCACAGAAGATCGGGTGTTCAGGTGTCTGTAAAAGGAAGAGATCAAAACGGCAAAGTTGATAGAGACGGGTCCCGGAAGGACAGTTACAAACGAGATCATCACAAAAGGAAGTGA 1071 0.408 MVLILLSVYPCQVCKNGSFHLRGNVYVQYKALDSALLAANLINRHDFTGKRVTCQFVNLTRWKVAICGEYMKSGFKTCSRGTACNFIHCFRNPGGDYEWADSDKPPPKFWVEKMIALFGYSDDYETSREQGNFSLSKTDSDRYHCRRSRSRETDQISCGHSGRRKHEDERKQRTPYEDRNASLKNTHKRKSRGRTPDTDSDREWLEKEEIRERRHEYTRNGSFNKNRDENSRSHEEDSDMDCDTRDNEKQHGRNPRKCDKDIRVWINEAAGLDGDRDVRKHRIRESSGHQSGDASESNKDLFGRVEMETLHDHFRKTYSHRRSGVQVSVKGRDQNGKVDRDGSRKDSYKRDHHKRK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6485g00001 356 Gene3D - 7 73 IPR012677 -
Vium6485g00001 356 MobiDBLite consensus disorder prediction 315 356 - -
Vium6485g00001 356 MobiDBLite consensus disorder prediction 333 348 - -
Vium6485g00001 356 SMART c3hfinal6 61 90 IPR000571 GO:0046872
Vium6485g00001 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 90 IPR000571 GO:0046872
Vium6485g00001 356 PRINTS U2 auxiliary factor small subunit signature 81 93 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6485g00001 356 PRINTS U2 auxiliary factor small subunit signature 43 67 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6485g00001 356 PRINTS U2 auxiliary factor small subunit signature 16 38 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6485g00001 356 MobiDBLite consensus disorder prediction 216 256 - -
Vium6485g00001 356 MobiDBLite consensus disorder prediction 144 184 - -
Vium6485g00001 356 ProSiteProfiles Zinc finger C3H1-type profile. 61 91 IPR000571 GO:0046872
Vium6485g00001 356 MobiDBLite consensus disorder prediction 277 299 - -
Vium6485g00001 356 MobiDBLite consensus disorder prediction 144 203 - -
Vium6485g00001 356 SUPERFAMILY RNA-binding domain, RBD 8 59 IPR035979 GO:0003676
Vium6485g00001 356 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 12 245 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium6485g00001 zf-CCCH 2.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6485g00001 K24273 - gmx:100789091 437.958