Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6482g00001 ATGACTGGTAAAAGTTCAATTACTCAGCCAGCAACCAGACATGGAACCAACAAACCGACCAAATATGATTTAGCTGATCCAGAATGGACCAAAAGGATTCCAGATTGTCCAACATACTACCCATCAGAGCATGAGTTTGACCATCCTTTAGTTTTTCTGCAGAAAATAGCTCCTGAGGCTTCTAAATATGGTATATGCAATATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGTAAGAGAAAAAGGATTTCAAGTTTGAAACAAACTTACAGCCTCTTCGTCTGTCTAAATGGAATGAGAAGGAAACAATAACCTTTTCTATGAGTGGCAGAAAATATACATATCATGAATTTGAGGCTCTTGCAAACAAGACATTTTTCAGTAGATTTCACTGTTCTGGAGGTCTTTCTTCTTCATGTGTGGAAAAGGAGTTCTGGCATGAGATGATGCATGGAGAGATGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGAATAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCATCCTTACGTTTAGTTGACAAGGAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGAATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAGTAAAACTTGGTATGGAGTGCCTGGCTATGCAGCCCCTCATTTTGAAAAGACCGTATTAAAACACGTGTATTGCAATAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCTGGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTTATGTTACAACATGATGTGGATGTTTACAAGGCTGTACAGAAACCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAATTTTGCCACTGATGACTGGTTTCCATTTGGGGCAGCAGCCAGCAGGCGTTATGCACTTCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTAGTTTACAAGTCCTCCTCAAGAGTCAGAAGTTCCAAGAACAAGCCAGAAGACACAGCACCTTATAAAGCTATAGTGCAGCCTTTCTTGCATCTTATGCAATTTTATATGACATCCCTTTTGCGACTGAAGAGTTCAAGAAACTTGCAAAGTTATTCAAATACATCAGGTTTGCTGATATGCCGCATATGCCACAGGGATTGTTATGTGGCTTACCTGCTATGCAAGTACTGCTTTTCTCATCCAATTTGTCTTTTCCATG 1378 0.3955 MTGKSSITQPATRHGTNKPTKYDLADPEWTKRIPDCPTYYPSEHEFDHPLVFLQKIAPEASKYGICNIVSPIAASNPAAFVLMXEKKDFKFETNLQPLRLSKWNEKETITFSMSGRKYTYHEFEALANKTFFSRFHCSGGLSSSCVEKEFWHEMMHGEMGTVEYGVNVEGSAFSCDPDDRLGISKWNLKNFSRLLQSSLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGASKTWYGVPGYAAPHFEKTVLKHVYCNKILTKHGEDGAFWFLAQKTTMFPPNVMLQHDVDVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFATDDWFPFGAAASRRYALLRMMPLIPYEELLCKEAMLVYKSSSRVRSSKNKPEDTAPYKAIVQPFLHLMQFYMTSLLRLKSSRNLQSYSNTSGLLICRICHRDCYVAYLLCKYCFSHPICLFH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6482g00001 459 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Vium6482g00001 459 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Vium6482g00001 459 Pfam jmjN domain 37 69 IPR003349 -
Vium6482g00001 459 FunFam Lysine-specific demethylase isoform A 31 380 - -
Vium6482g00001 459 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 448 - -
Vium6482g00001 459 MobiDBLite consensus disorder prediction 1 16 - -
Vium6482g00001 459 SUPERFAMILY Clavaminate synthase-like 194 370 - -
Vium6482g00001 459 ProSiteProfiles JmjC domain profile. 183 353 IPR003347 -
Vium6482g00001 459 MobiDBLite consensus disorder prediction 1 23 - -
Vium6482g00001 459 SMART cupin_9 183 353 IPR003347 -
Vium6482g00001 459 Gene3D Cupin 36 399 - -
Vium6482g00001 459 SMART JmjN_1 35 76 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6482g00001 Vium-Chr6482 163 2453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6482g00001 26 456 JUMONJI Transcription Factor Family AT2G34880 31.755 3.75e-58 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium6482g00001 JmjC 4.6e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6482g00001 - - vum:124843430 957.207