Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium647g00009 ATGGCTGCTGCTTCCTCCATGGCACTCTCATCCCCCTCCTTGGCTGGCAAGGCCGTCAAGCTTGCCCCATCAGCCCCCGAAGTCGGGAGGGTCAGCATGAGGAAGACCGTCACCAAGCAGGTTTCCTCCGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACCGGCGAGTTCCCAGGTGACTACGGTTGGGACACTGCTGGGCTTTCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGTTGGAAGTCATCCACTCCAGGTGGGCCATGCTCGGAGCCTTGGGCTGCGTCTTCCCCGAACTCTTGTCCCGCAACGGCGTGAAATTCGGCGAGGCCGTGTGGTTCAAAGCTGGTTCCCAGATCTTCAGCGAGGGTGGGCTCGACTACTTGGGCAACCCAAGCCTCATCCACGCTCAGAGCATCCTCGCCATCTGGGCCACCCAAGTCATCCTCATGGGCGCCGTTGAGGGTTACCGTATTGCCGGTGGACCTCTCGGTGAGGTCACTGACCCCATTTACCCCGGTGGCAGCTTCGACCCATTGGGTCTCGCTGACGACCCAGAGGCTTTCGCTGAGCTCAAGGTTAAGGAACTCAAGAACGGTAGGTTGGCCATGTTCTCCATGTTCGGGTTCTTCGTCCAGGCCATTGTCACCGGAAAGGGACCATTGGAGAACCTCGCTGACCACCTTGCTGACCCAGTCAACAACAACGCCTGGGCCTACGCCACCAACTTCGTCCCCGGAAAGTGA 792 0.6048 MAAASSMALSSPSLAGKAVKLAPSAPEVGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium647g00009 263 Gene3D Chlorophyll a/b binding protein domain 54 256 - -
Vium647g00009 263 FunFam Chlorophyll a-b binding protein, chloroplastic 54 256 - -
Vium647g00009 263 Pfam Chlorophyll A-B binding protein 63 229 IPR022796 -
Vium647g00009 263 SUPERFAMILY Chlorophyll a-b binding protein 46 260 - -
Vium647g00009 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 263 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium647g00009 Vium-Chr647 50438 55248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium647g00009 3 263 Chloroplast and Mitochondria Gene Families AT1G29930 89.098 3.05e-172 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium647g00009 K08912 - gmx:100805310 529.635