Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium647g00004 ATGATGCTCTCCCTAAAGATTAGTTTGACTACAGTCGTCGTCCTTTCCATTGTATCCATAGTTTCCCATGCTGAAACAAGCTTGGAGGTTGAAATTGAAGCCTTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAGTGGGGCTCTAGCAGACTGGGTAGACAGTCGCAACCACTGCAATTGGTCTGGCATTGCATGTGACCCATCTTCAAATCATGTCATTTCTATTTCTCTAGTTAGTCTTCAACTCCAAGGGAAGATTTCACCTTTCCTTGGGAACATTTCAGGCCTTCAGGTTTTTGATATAACTTCAAACTCATTCACTGGCTACATTCCTGCTGAACTCGGTCTTAATACTCAACTTACAGAACTCACTCTTGTTGACAATTCTCTCTCAGGTCCTATCCCTCCACAATTAGGTAGCCTAAAAAGCCTGCAGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCTGAGAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTTCAACAATCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAACCTTATACAGATTGCAGGTTTTGGAAATAATTTGGTAGGATCTATACCTCTTTCCGTAGGTCAGTTAGGAGCTTTGCGAGCTCTTGATTTTAGCCAAAACAAGTTGTCAGGTGTAATACCTCGAGAGATTGGAAACCTAAAAAAATTAGAATACCTTGAATTGTTCCAAAATTCCTTGACTGGGAAAATTCCTTTTGAGCTTGGTAAGTGTAGCAATCTTTCAAGCCTTGAGTTATCCGATAATCAGCTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGATAAGTTGGAGAAATTGAAGTTACACAAGAATAACTTGAATTCCACCATCCCTTCAGCCATATTCCAGTTGAAATCATTAACACATCTAGGCCTCTCACAGAATAACTTAGAGGGAACAATATCTTCTGAGATTGGATATATGAACTCCTTGCAGGTTCTAACCCTGCATTTAAACAAGTTAACTGGGGAGATTCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTACTCTCAGGTGAACTTCCTTCCAACTTGGGTGTGCTTCGTAATTTGCAGTTTCTTGTTTTGAACGCAAACCACTTTACTGGATCCATCCCGCCTAGCATTACTAATTGTACTGGACTGGTAAACGTAAGTTTGTCTTTTAATGCTTTAAGTGGTAAAATTCCCGAGGGTTTTTCCAGGGCACCAAATCTTACTTTCCTCTCTCTTGCGTCCAACAAAATGACTGGGGAAATCCCGGATGACCTCTATAATTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAATAACTTCAGTGGATTGATAAAACCAGATATCCAAAACCTGTCTAAACTTCAACGACTACAGTTGAATGTAAATTCTTTCACAGGATCAATTCCACCAGAGATTGGAAACTTGAATCAACTCATTACTCTATCCCTCTCTGAAAATAAGTTTTCAGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCGCCTTCAGGGGCTCACTCTTCATGCCAATTTATTAGAAGGTAGAATACCTGATAAGCTCTCCGAACTAAAAGGACTAACTGAACTTTTCCTGCATCAAAATAAGTTGGCTGGGCAAATACCTGATACTCTCTCAAAGCTTGAGATGCTTTCCTACCTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGAAGTTAAATCAACTTTTAGTTTTGGATCTCTCTCACAACCAGCTTACAGGATCAATTCCGGGAGATGTCATTGCAAAGTTAAAAGGCATGCAGATGTATCTCAACCTTTCTTACAACCACTTGGTCGGAAATGTTTCAACTGAGTTGGGCATGCTGGAAATGATACAGGCTATTGACATTTCAAACAATAATCTTTCTGGTTTCATTCCCAAAGCAGTTGCTGGGTGCAGAAATCTGTTTAATCTTGATTTTTCAGGAAACAGTATTTCAGGTCCTATTCCCGCAGAAGCGTTCAGTCACATGGACGTGCTTGAAAGCTTAAACCTCTCAAGGAACCATTTAGACGGTGAAATCCCTAATATACTGGCAGAACTTGATCATCTTAGTTCCCTAGATCTTTCTCAGAATAACTTGAAGGGAATTATTCCTGAAGGCTTTGCCAACCTTTCCAAGTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCAGTTCCCAAGACCGGAGCATTTGCACAAATCAATGCATCTAGTGTGATGGGAAACCAGGATCTTTGTGGAGCTCAATTCCTACCGCCATGCAGGAAGACAAAACACTCACTTTCCAAGAAGGGCATAATTATTATTGCTTCACTTGGATCTCTAGCTATACTTCTAGTGGTAGTGATTCTAATCCTCACTCGTGGCACCAAACTCAGCAATTCTAAAGAAAGAGACAGCAGTGTTAATCATGAACCAGACTACAATTCAGCATTGGCACTTAAAAGGTTCAGTACAAAGGAATTGGAGAATGCCACTAGATTTTTCAGTGCGGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAAGATGGCCAGGTTGTTGCCATAAAAAGGTTGAATTTGCAACAATTCTCTTCCAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGTTGAGACATAGGAATTTGATCAAAGTACTTGGATATGCCTGGCAGAGTGGGAAAATGAAGGCTTTGGTTCTGGAGTACATGGAAAATGGAAATTTGGATAGCATCATACATGGCAACGGGGTAGATCAGTCTGTGATCTCTAGGTGGACATTATCTGAAAGAGTCCGAGTCTTCATATCTATTGCTGAAGCATTGGATTATTTGCACTCGGGTTATCATATTCCCATTGTGCACTGTGATTTAAAGCCTTCCAACATTCTTTTAGATAGAGACTGGGAAGCTCATGTCAGTGACTTTGGCACAGCTCGAATACTTGGTCTTAATCTACAAGAAGGTAGTACCCTTTCGTCGTCAGCAGCTGTGCAAGGCACAGTTGGCTACATGGCACCAGAATTTGCCTACACGAGGAAAGTGACAACTAAAGCAGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTCCTAACCAAAAGAAGGCCGACAGGACTCTCGGAAGAGAATGGCTTGCCAATCACTTTGCGTGAATTAGTGGCAAAAGCCCTTGCAGATGGAACAGAACAACTTATGAATATTGTGGATCCTTTGTTGACCTGGAATGTAACAAAAGACTATGATGAAGTGGTGGCAGAGCTCTTTAAGCTATCTCTGTGCTGCACCATACCTGATCCTGAACAGAGACCCAATATGAATGAGGTGTTATCTGCCCTTGTGAAGCTTCAAACAACACTGTCTTGCTAA 3495 0.41 MMLSLKISLTTVVVLSIVSIVSHAETSLEVEIEALKAFKNSITGDPSGALADWVDSRNHCNWSGIACDPSSNHVISISLVSLQLQGKISPFLGNISGLQVFDITSNSFTGYIPAELGLNTQLTELTLVDNSLSGPIPPQLGSLKSLQYLDLGNNFLNGSLPESIFNCTSLLGIAFNFNNLTGRIPSNIGNLVNLIQIAGFGNNLVGSIPLSVGQLGALRALDFSQNKLSGVIPREIGNLKKLEYLELFQNSLTGKIPFELGKCSNLSSLELSDNQLIGSIPPELGNLDKLEKLKLHKNNLNSTIPSAIFQLKSLTHLGLSQNNLEGTISSEIGYMNSLQVLTLHLNKLTGEIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLRNLQFLVLNANHFTGSIPPSITNCTGLVNVSLSFNALSGKIPEGFSRAPNLTFLSLASNKMTGEIPDDLYNCSNLSTLSLAMNNFSGLIKPDIQNLSKLQRLQLNVNSFTGSIPPEIGNLNQLITLSLSENKFSGQIPPELSKLSRLQGLTLHANLLEGRIPDKLSELKGLTELFLHQNKLAGQIPDTLSKLEMLSYLDLHGNKLNGSIPRSMGKLNQLLVLDLSHNQLTGSIPGDVIAKLKGMQMYLNLSYNHLVGNVSTELGMLEMIQAIDISNNNLSGFIPKAVAGCRNLFNLDFSGNSISGPIPAEAFSHMDVLESLNLSRNHLDGEIPNILAELDHLSSLDLSQNNLKGIIPEGFANLSKLVHLNLSFNQLEGPVPKTGAFAQINASSVMGNQDLCGAQFLPPCRKTKHSLSKKGIIIIASLGSLAILLVVVILILTRGTKLSNSKERDSSVNHEPDYNSALALKRFSTKELENATRFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSSNTDKIFKREANTLSQLRHRNLIKVLGYAWQSGKMKALVLEYMENGNLDSIIHGNGVDQSVISRWTLSERVRVFISIAEALDYLHSGYHIPIVHCDLKPSNILLDRDWEAHVSDFGTARILGLNLQEGSTLSSSAAVQGTVGYMAPEFAYTRKVTTKADVFSFGIIVMEFLTKRRPTGLSEENGLPITLRELVAKALADGTEQLMNIVDPLLTWNVTKDYDEVVAELFKLSLCCTIPDPEQRPNMNEVLSALVKLQTTLSC 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium647g00004 1164 Pfam Protein kinase domain 869 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium647g00004 1164 Gene3D Transferase(Phosphotransferase) domain 1 946 1163 - -
Vium647g00004 1164 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 380 644 - -
Vium647g00004 1164 SUPERFAMILY L domain-like 474 793 - -
Vium647g00004 1164 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 667 792 - -
Vium647g00004 1164 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Vium647g00004 1164 SUPERFAMILY Protein kinase-like (PK-like) 845 1159 IPR011009 -
Vium647g00004 1164 SUPERFAMILY L domain-like 290 539 - -
Vium647g00004 1164 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 183 281 - -
Vium647g00004 1164 FunFam Piriformospora indica-insensitive protein 2 282 376 - -
Vium647g00004 1164 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515
Vium647g00004 1164 SMART serkin_6 867 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium647g00004 1164 SUPERFAMILY L domain-like 30 305 - -
Vium647g00004 1164 Gene3D Ribonuclease Inhibitor 508 796 IPR032675 -
Vium647g00004 1164 Gene3D Ribonuclease Inhibitor 264 428 IPR032675 -
Vium647g00004 1164 Gene3D Phosphorylase Kinase; domain 1 828 945 - -
Vium647g00004 1164 Pfam Leucine rich repeat 721 759 IPR001611 GO:0005515
Vium647g00004 1164 Pfam Leucine rich repeat 653 711 IPR001611 GO:0005515
Vium647g00004 1164 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Vium647g00004 1164 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515
Vium647g00004 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Vium647g00004 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 827 945 - -
Vium647g00004 1164 SMART LRR_typ_2 359 381 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 698 721 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 599 623 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 383 407 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 215 239 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 287 311 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 479 503 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 722 745 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 746 771 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 143 167 IPR003591 -
Vium647g00004 1164 SMART LRR_typ_2 551 575 IPR003591 -
Vium647g00004 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 182 - -
Vium647g00004 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 946 1163 - -
Vium647g00004 1164 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 394 1153 - -
Vium647g00004 1164 ProSiteProfiles Protein kinase domain profile. 867 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium647g00004 1164 CDD STKc_IRAK 873 1158 - -
Vium647g00004 1164 PRINTS Leucine-rich repeat signature 602 615 - -
Vium647g00004 1164 PRINTS Leucine-rich repeat signature 722 735 - -
Vium647g00004 1164 SMART LRR_sd22_2 143 169 - -
Vium647g00004 1164 SMART LRR_sd22_2 722 748 - -
Vium647g00004 1164 SMART LRR_sd22_2 263 289 - -
Vium647g00004 1164 SMART LRR_sd22_2 215 247 - -
Vium647g00004 1164 SMART LRR_sd22_2 551 580 - -
Vium647g00004 1164 SMART LRR_sd22_2 599 620 - -
Vium647g00004 1164 SMART LRR_sd22_2 359 382 - -
Vium647g00004 1164 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vium647g00004 1164 Gene3D Ribonuclease Inhibitor 190 263 IPR032675 -
Vium647g00004 1164 Gene3D Ribonuclease Inhibitor 429 503 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium647g00004 Vium-Chr647 30759 34932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium647g00004 21 1159 Receptor kinase-like Gene Family AT5G46330 54.403 0.0 1158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium647g00004 Pkinase 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium647g00004 K13420 - gmx:100788119 1937.92