Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6479g00001 ATGTGGTCAAAATCTGACCTGGAATGTTCAATAATTGCTCGCTGGCAATTGTGCTATGAAGCAACGCGTTTCATCATGGGAAACACTTGTGCGAAAGGAAAACCGATTGCTCATGTATCTTCCTCCAATTTTTCTGGAAACAAGAGGCCTGCAAGTAAGCCAAGGCAGGATTCAAATTCTTCTGCACAAAATCATGCTCCAAAAACTTCAGAATCAAATGTTCCCGTATCCATCTCTAGTAGCTTAAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAAAATTTCAGGAAAGAAAATTTGATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAGAATTCATATGGTCCCACAAGACCAGGCACTGGAATTGTGGTGGCCATTAAAAATCTTAAACCAGAAAGTTTCCAAGGCCACAGCGAATGGCTTGCAGAAGTCAGTTATCTTGGGCAGCATCAGCATGACAATTTGGTGAAACTTATTGGTTATTGTTTGGAGGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAGAAAGGAAGTTTGGAGAATCATTTATTCCGAAAAGGTGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTAGCAAGAGGACTAGCATTCTTACATTCCCTGGATCAAAATGTCATCTTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGACTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGGGATGGTCCAACTGGAGATAATACTCATGTTTCAACTCGAGTAATAGGAACTCAAGGCTATGCTGCACCAGAGTATGTTGCTACAGGTCACCTGGCACCAAGAAGTGATGTATACAGCTTTGGTGTAGTGTTGTTAGAGTTGCTTACTGGTAGGCGTGCTGTGGAAGATGACAGACCTGGATTTTCAGATGAAACCTTGGTGGATTGGGCAAAGCCATTTTTGAGTGACAACAGAAGAGTTTTGAGAATAATGGACACAAGGTTGGGGGGTCAATACTCTAAGAAAGGGGCAATGGCTGCAGCTGCACTTGCACTGCAATGCCTCAACACTGACCCCAAATTTAGACCCCCTATGGTGGAAGTTCTAGCAGCATTGGAAGTGCTTAATTCCTCAAATTCATTCTCAAGAACACCACCAAGACCTGAGAGCCATGCAACCAAAAATTCTGCTGGTCATTCTCAAAAGTAA 1227 0.4262 MWSKSDLECSIIARWQLCYEATRFIMGNTCAKGKPIAHVSSSNFSGNKRPASKPRQDSNSSAQNHAPKTSESNVPVSISSSLKSFSLNDLKEATKNFRKENLIGEGGFGRVFKGWIDENSYGPTRPGTGIVVAIKNLKPESFQGHSEWLAEVSYLGQHQHDNLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLAFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLAPRSDVYSFGVVLLELLTGRRAVEDDRPGFSDETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAMAAAALALQCLNTDPKFRPPMVEVLAALEVLNSSNSFSRTPPRPESHATKNSAGHSQK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6479g00001 408 PANTHER OS01G0588500 PROTEIN-RELATED 62 381 - -
Vium6479g00001 408 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6479g00001 408 MobiDBLite consensus disorder prediction 41 75 - -
Vium6479g00001 408 ProSitePatterns Protein kinases ATP-binding region signature. 103 135 IPR017441 GO:0005524
Vium6479g00001 408 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 183 391 - -
Vium6479g00001 408 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6479g00001 408 CDD STKc_IRAK 103 379 - -
Vium6479g00001 408 FunFam Serine/threonine-protein kinase BIK1 63 182 - -
Vium6479g00001 408 MobiDBLite consensus disorder prediction 385 408 - -
Vium6479g00001 408 Gene3D Phosphorylase Kinase; domain 1 72 182 - -
Vium6479g00001 408 Pfam Protein tyrosine and serine/threonine kinase 100 376 IPR001245 GO:0004672|GO:0006468
Vium6479g00001 408 SUPERFAMILY Protein kinase-like (PK-like) 71 385 IPR011009 -
Vium6479g00001 408 Gene3D Transferase(Phosphotransferase) domain 1 183 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6479g00001 Vium-Chr6479 21232 23750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6479g00001 59 394 Glycoside Hydrolase AT3G07070 46.377 1.98e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium6479g00001 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6479g00001 - - vum:124843429 791.571