Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6478g00002 ATGAATATTTCATTCATTATCAATGTGGTTCTTCTGCTTGCAATCATACTGCTCTTGCTGCTTTACTACAACACATACACAAGGCTGAATAAAATAGTGAAGGGGCAGATTCACACAGTCATAGAAAAAGAGGATGACGTGGAGATCGGTGTTGAAAAGAAGATAGAGATAGGAGAGGGGACAGTGATTATGACAGTGGAAGAGAGAAAGGGGCTGATATTCTTTAACGATAGCCAGAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGCCACTGGGTCATGGGATCTTGGGAAACAGTTATAAGGCTATGCTGAATAGTGGATCTACCATTGTCGTCAAAAGGCTAAGGGACTTGAAGCCATTTACAAAGGAGGAATTTGAGAAGATAGTGAATGCGATTGCTGATATGAAGCACCCCAATTTGTTGCCTTTGCTCGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTTTACAGTTTTGCAGGGAATGGAAATCTTTTCTCCCGACTTCATGATAGAGGCGGAAACCGGGCACCGTTCGGTTGGAACTCAAGATTGTCAGTTGCAAGAGGAGTGGCTCGAGCATTGGTGTACCTGCACCTCAACCACAAGTTCCAAAACGTTGTCCCACACGGCAACTTGCGGTCTTCAAACGTATTATTCGATGAAAACGATGCGGTTCTTGTTTCTGACTTCGGTCTTGCCTCCTTGATAGCACAACCTATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTACGCAAGAAAGGTGACAATGCAAGCCGATGTGTGGAGCTATGGTTCACTTCTGATAGAGCTTCTGACCGGAAAAGTGTCTATTAACTCGGCTCCACAAGGAACGAATGGCGTGGATCTATGCAGTTGGGTTCATAGAGCAGTGAGGGAAGAATGGACAGCTGAGATATTTGACAAAGAAATATCAGGGCAAAAGAGTGCACTTCCTGGGATGCTGAGGTTGTTGCAGCTTGCAATGCGTTGCATTGAGAGGTTCCCTGAGAAGCGCCCTGAGATGAGAGAGGTGATGAGAGAAGTGGAGAAAATACAGGTCCCGGTGATCACAGAAGATGATGACGATGTGTCTGGGGATAGGTCCCTAACTGATGATTCTCTTTCAACCAGTACCTCTATCATTGGAGATGAAAGATAG 1188 0.4487 MNISFIINVVLLLAIILLLLLYYNTYTRLNKIVKGQIHTVIEKEDDVEIGVEKKIEIGEGTVIMTVEERKGLIFFNDSQKFQMGELLRASAEPLGHGILGNSYKAMLNSGSTIVVKRLRDLKPFTKEEFEKIVNAIADMKHPNLLPLLAYYHSRDEKLMLYSFAGNGNLFSRLHDRGGNRAPFGWNSRLSVARGVARALVYLHLNHKFQNVVPHGNLRSSNVLFDENDAVLVSDFGLASLIAQPIAAQHMVVYKSPEYGYARKVTMQADVWSYGSLLIELLTGKVSINSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISGQKSALPGMLRLLQLAMRCIERFPEKRPEMREVMREVEKIQVPVITEDDDDVSGDRSLTDDSLSTSTSIIGDER 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6478g00002 395 SUPERFAMILY Protein kinase-like (PK-like) 92 363 IPR011009 -
Vium6478g00002 395 MobiDBLite consensus disorder prediction 365 395 - -
Vium6478g00002 395 MobiDBLite consensus disorder prediction 379 395 - -
Vium6478g00002 395 Gene3D Transferase(Phosphotransferase) domain 1 165 371 - -
Vium6478g00002 395 ProSiteProfiles Protein kinase domain profile. 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6478g00002 395 Gene3D Phosphorylase Kinase; domain 1 61 163 - -
Vium6478g00002 395 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 362 IPR046959 -
Vium6478g00002 395 ProSiteProfiles PUA domain profile. 49 122 - -
Vium6478g00002 395 Pfam Protein tyrosine and serine/threonine kinase 92 357 IPR001245 GO:0004672|GO:0006468
Vium6478g00002 395 SMART serkin_6 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6478g00002 Vium-Chr6478 24532 25921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6478g00002 43 387 Receptor kinase-like Gene Family AT2G36570 38.814 2.25e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium6478g00002 PK_Tyr_Ser-Thr 9.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6478g00002 - - vra:106774985 705.671