Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6478g00001 ATGAAAATGGAGGGTGCTATGCTTCTAAAGTTGGTTTTGGTTGCTGCTGCTGTTGTGAACACAGTGCATGGGCATGGGACGCGTGTAGGGTTCTATTCCAGAACATGTCCGGCTGCTGAATCCATTGTTACCTCCACAGTTGAGTCCCACGTTAGGTCTGACCCTACTTTGGCTGCTGCCATACTCAGGCTGCACTTCCATGATTGCTTTGTCCGAGGTTGTGATGCTTCTGTTCTCATTGCTGGCTCTGCTACCGAGAGAACAGCACGCCCAAACCTTAGTCTCAGAGGATACGAGGTTATTGACGATGCAAAGGAAAAGCTCGAAGCTCGCTGCCCTGGTGTTGTGTCCTGTGCTGATATCCTTGCTCTTGCTGCTCGTGATTCTGTTGTTCTGAGTGGTGGAAGAAGTTGGAAAGTGCCAACAGGACGCAAAGATGGAAGAGTTTCAATTGGAAGCGAAGCCCTTAGTTTGCCTGGTCCTAACGATACTGTCTCTGTGCAGAAGACTAAGTTTTCTGATAAGGGTCTCAACACCCTAGACCTGGTCGTTCTTGTTGGTGGACATACAATAGGCACATCAGCTTGCCAATCTTTTGCAGACAGAATATACAACCCTAATGGCACCGCTGATCCTTCCATCGACCCTTCGTTTCTTCCATTTCTGCGACAGATTTGCCCACAAAACCAGCCAACGAAACGAGTGGCACTGGACACTGATAGCCAATTCAAATTCGACACTTCGTACTTTGCTCACCTGAAGAGAGGGCGTGGAATTCTCCGTTCTGATCAAGCGCTTTGGACTGATCCTTCCACAAGACCCTTTGTTCAGAAATACTTAGCCACCGCTCTTTTCAACTACCAATTCGGAAACTCTATGGTTAAGATGAGCAACATTGGTGTCAAACAGGGTGATGACGGTGAAATTCGCAACAAATGTTCTGCTATAAATTAA 954 0.4738 MKMEGAMLLKLVLVAAAVVNTVHGHGTRVGFYSRTCPAAESIVTSTVESHVRSDPTLAAAILRLHFHDCFVRGCDASVLIAGSATERTARPNLSLRGYEVIDDAKEKLEARCPGVVSCADILALAARDSVVLSGGRSWKVPTGRKDGRVSIGSEALSLPGPNDTVSVQKTKFSDKGLNTLDLVVLVGGHTIGTSACQSFADRIYNPNGTADPSIDPSFLPFLRQICPQNQPTKRVALDTDSQFKFDTSYFAHLKRGRGILRSDQALWTDPSTRPFVQKYLATALFNYQFGNSMVKMSNIGVKQGDDGEIRNKCSAIN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6478g00001 317 PANTHER PEROXIDASE 25-RELATED 14 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 Gene3D Peroxidase, domain 2 159 296 - -
Vium6478g00001 317 Gene3D - 30 317 - -
Vium6478g00001 317 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vium6478g00001 317 Pfam Peroxidase 44 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 FunFam Peroxidase 30 171 - -
Vium6478g00001 317 SUPERFAMILY Heme-dependent peroxidases 28 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 FunFam Peroxidase 159 296 - -
Vium6478g00001 317 CDD secretory_peroxidase 28 316 IPR033905 GO:0004601|GO:0042744
Vium6478g00001 317 ProSiteProfiles Plant heme peroxidase family profile. 26 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium6478g00001 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6478g00001 Vium-Chr6478 18813 20321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6478g00001 8 317 Peroxidase AT5G64120 59.006 2.56e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6478g00001 K00430 - gmx:100789249 505.368