Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6474g00007 ATGAGTGATGCACAAGAACACGAAGAGGCTGCCCAGGGCGAGCCCTCGGTCGTGGAAGAGAACAAGTTGTTGGTTGATACAAAGGATCGAGTTCAGCCTCAAGATGCCTCTGCTGCTGTTCCAGAATAGGAAGCGTCAAACCTTGCTGAAAATGGGTCAAATCATGTCGAAAGTGGGTCAAATCCTGCTGAAAATAAGAAGGAAGAGCCATCTGCTGCTGAACATAAAAATGTGGAACCTCAGGTTGTTTCAGAAGGAATTTCACAAGAGGATGTCCAAAATACTCTTCACTCTGTCCCAGTAGAGGCTCATACTCAGGTTTTGAATACGACAGAATGTGAAGAAGCGTCTAAAGCGAAGGGGGAAGCTGAAAATTTTCCCACAAGTGATAAGAAGGTTGAGAATAGTGATGATATTCGTCAGAATAGTATTGATGATGTTGGAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGATTGACAGTAAAACTTGCGACAATGGTGATCCAATGCCTGCAAGCCATAATGAGCCTGCTGTATCACAATCTGCTCCTGCTGATACAAACACTGAATTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTATCGATCCTGCTGATAATGGGAATTCAAACTCAAAGCACTTGTCTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACCGAGGAGGATCAGTCAGCATTCACGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACATCCCAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACTTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCGATTTCTTCTCACCCAGAGCCAATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCCATGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAGCCATCTTCACCTTACATGGATAATGCAGTCAAGGCTGCACGCAGTAAACCTTCTAAACCCCAATTGGACACAACTGTGATTGATATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTACAGTCAGACCCAGCAGGACGCCTCGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAGAAAGGTCGTCAGCTTGCCCTCAAGAATTGATCCCCATCAGACGTCGGCGGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAGTCCGAATAG 1608 0.449 MSDAQEHEEAAQGEPSVVEENKLLVDTKDRVQPQDASAAVPEXEASNLAENGSNHVESGSNPAENKKEEPSAAEHKNVEPQVVSEGISQEDVQNTLHSVPVEAHTQVLNTTECEEASKAKGEAENFPTSDKKVENSDDIRQNSIDDVGMAVEVKPEGCGVIDSKTCDNGDPMPASHNEPAVSQSAPADTNTEFVNVLEVENKADEKQAIDPADNGNSNSKHLSFLDADHSYDGNESGTEEDQSAFTKELENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSMSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFRKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6474g00007 535 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 435 535 IPR002068 -
Vium6474g00007 535 SMART ARID_2 236 326 - -
Vium6474g00007 535 Pfam ARID/BRIGHT DNA binding domain 242 326 IPR001606 GO:0003677
Vium6474g00007 535 MobiDBLite consensus disorder prediction 61 75 - -
Vium6474g00007 535 CDD ACD_sHsps-like 450 530 - -
Vium6474g00007 535 MobiDBLite consensus disorder prediction 1 29 - -
Vium6474g00007 535 FunFam AT-rich interactive domain-containing protein 3 427 535 - -
Vium6474g00007 535 MobiDBLite consensus disorder prediction 82 113 - -
Vium6474g00007 535 MobiDBLite consensus disorder prediction 225 244 - -
Vium6474g00007 535 CDD ARID 241 326 - -
Vium6474g00007 535 MobiDBLite consensus disorder prediction 1 147 - -
Vium6474g00007 535 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 3 534 IPR045147 GO:0006357
Vium6474g00007 535 MobiDBLite consensus disorder prediction 161 185 - -
Vium6474g00007 535 FunFam AT-rich interactive domain-containing protein 3 239 338 - -
Vium6474g00007 535 SUPERFAMILY HSP20-like chaperones 444 531 IPR008978 -
Vium6474g00007 535 MobiDBLite consensus disorder prediction 200 244 - -
Vium6474g00007 535 Pfam Hsp20/alpha crystallin family 452 534 IPR002068 -
Vium6474g00007 535 Gene3D - 239 336 IPR036431 GO:0003677
Vium6474g00007 535 Gene3D - 437 535 IPR008978 -
Vium6474g00007 535 SMART bright_3 240 331 IPR001606 GO:0003677
Vium6474g00007 535 MobiDBLite consensus disorder prediction 115 141 - -
Vium6474g00007 535 SUPERFAMILY ARID-like 234 342 IPR036431 GO:0003677
Vium6474g00007 535 ProSiteProfiles ARID domain profile. 239 330 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6474g00007 Vium-Chr6474 37052 43472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6474g00007 234 533 ARID Transcription Factor Family AT1G76510 64.918 4.36e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium6474g00007 HSP20 2.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6474g00007 - - gmx:100791081 872.848