Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6474g00004 ATGGAGTTTGAGCCTTTGAGTCTTAGCAACGAGGTTATTGAATTTGATATGATTGGTTTGGGGTATGATGCTACCATTGACATGGAGCACCCTGTTGAGGACGGTGAGGACCATGTTAATATTGATTATAGTCCAGCTGCTGCTAATTCTGTTCTTGCTGCTGGTGTGGGCCCTCACATTTTTGGAGGGGACACTAATCTCGAACCTTGTCAAGGTATGGACTTTGAATCGGAAGAGGCTGCAAAGGCCTTCTACAATTCCTACGCTCGCCGTGTTGGCTTTAGCACGCGGGTGAGCATGTCTCGGCGCTCCAGGCGTGACGGTTCTATAATTCAGAGGTCCTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAAGGAGAAGCATTTGATCGATGGAAGAGTCAAGCGGCCACGTGCCGAAACCCGCGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCATTTGTCAAAGAACATAATCATGACTTGGTTCCGCCGGACAAGGTGCATTGCCTTCGTTCTCATCGTCATGTTTCGGGTCCAGCTAAGTCGTTGATTGATACTTTGCAGAGTGCTGGAATAGGACCTAGTGGAATAATGTCTGCTCTAATAAAAGAATACGGTGGAATTAGCAATATTGGTTTCACCGAGCGTGACTGTAGGAATTATATGAGAAGCAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTTTTGGACTACTTGAAGAGCAAGCAAGCAGAGAATCCTTCATTTTTCTTTGATGTACAAGGTGACGAAGATCACTGCATGAGTAATATCCTCTGGGTTGATCCCAATGCTAGGACTAATTATACTTACTTCGGAGACACTGTCACCTTTGATACAACATATAGGTCTAACCGCTATAGATTACCTTTTGCACCTTTCACTGGCATAAATCATCATGGACAGCCTGTATTATTTGGTTGTGCTCTTCTGATAAATGAATCCGAGGCATCTTTTGTCTGGCTTTTCAAAACCTGGCTTGAAGCAATGTCAGATAGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATATGTGCAGCCATCAACCATGTATTTCCCAGTACCCGTCACCGATTTTGTAAGTGGCACATTTTTAAGGAGTGCCAAGAGAAGTTGTCTCATATGCTTTCTGAACATCATAATTTTGAAGTTGACCTGCATAAATGCATTAACCTGACCGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTGTCTAATTGATAGGTATGATCTCACGAAACATGAATGGCTTCAAGCAATTTACAGTGATAGGCGGCAGTGGGTACCGGTGTACTTGAGGGATACATTTTTTGCAGAAATGTCAATAACACAGCGAAGTGATAGCATAAACTCTTATTTTGATGGATATATCAATGCATCAACAACGCTTCAGCTTTTTGTCAAGCAGTATGAGAAGGCTTTGGAGAGCCGTTTTGAAAAAGAAGTCAAAGCTGACTATGATACTATTAACACTACTCCAATTCTGAAGACTCCATCACCTATGGAGAAACAGGCAGCGGGAGTTTACACAAGGAGGTTGTTTATCAAATTTCAAGAAGAATTGGTTGAGACATTAACATTCTTGGCAAACAAAGTAGACGAAGAAGAAATTATTACCGTGTACAGAGTTGCCAAATATGGGGAAATGCACCGAGCCTACTTTGTCAACTTTAATTCGTTTGAGATGAAAGCTACTTGTAGCTGCCAGATGTTTGAGTTTTGTGGTCTAGTTTGTAGACATATATTGACTGTTTTTAGGGTGACAAACCTTCTTACTTTACCATCTCATTATATTTTAAAAAGATGGACCAGGATTGCTAAAAGTGGTGTCATATTGGATGAACATACTACTAATTTGTCAAATGGTTCTCACGAATCTCTAACCTTCCGATTCAGAAATCTTCGTCAACAGGCCCTTAAATATGTTGAAGAGGGAGTAACCTCTTCGGAAGTTTATGATGTAGCAATAAGTGCTCTTCGGGAAGCTGCGAGTAAGGTGGCATCTGCAACAAAAAATGATGGAAGACAGGTTATTGTAAACGGAACTTGTGAAGAATACCTTCATCAGAACAATGAAACAACTATAAGACGCAGTGATCCTCCATTTTGCTCGCAACAATCTTCATATAAGGATGACCAGGATAGAATAATTGAGAAGTTGACACGGCAACTAGACCGAGCTCGAAGGAAATGTGAAGTTTACAGGTCCAACTTGCTGTCAATTTTAAAAGACATTGAAGAGCAGAAGCTACAATTATCAGTTAAAGTCCAAAATGTTAAGTTGGGAATGAAAGAGTGA 2367 0.4153 MEFEPLSLSNEVIEFDMIGLGYDATIDMEHPVEDGEDHVNIDYSPAAANSVLAAGVGPHIFGGDTNLEPCQGMDFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEKEKHLIDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHDLVPPDKVHCLRSHRHVSGPAKSLIDTLQSAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSFFFDVQGDEDHCMSNILWVDPNARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGINHHGQPVLFGCALLINESEASFVWLFKTWLEAMSDRPPVSITTDHDRVICAAINHVFPSTRHRFCKWHIFKECQEKLSHMLSEHHNFEVDLHKCINLTESIEEFESCWSCLIDRYDLTKHEWLQAIYSDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQLFVKQYEKALESRFEKEVKADYDTINTTPILKTPSPMEKQAAGVYTRRLFIKFQEELVETLTFLANKVDEEEIITVYRVAKYGEMHRAYFVNFNSFEMKATCSCQMFEFCGLVCRHILTVFRVTNLLTLPSHYILKRWTRIAKSGVILDEHTTNLSNGSHESLTFRFRNLRQQALKYVEEGVTSSEVYDVAISALREAASKVASATKNDGRQVIVNGTCEEYLHQNNETTIRRSDPPFCSQQSSYKDDQDRIIEKLTRQLDRARRKCEVYRSNLLSILKDIEEQKLQLSVKVQNVKLGMKE 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6474g00004 788 ProSiteProfiles Zinc finger SWIM-type profile. 576 612 IPR007527 GO:0008270
Vium6474g00004 788 SMART 26again6 587 614 IPR006564 GO:0008270
Vium6474g00004 788 Pfam MULE transposase domain 296 388 IPR018289 -
Vium6474g00004 788 Coils Coil 733 760 - -
Vium6474g00004 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 690 IPR031052 GO:0006355
Vium6474g00004 788 Pfam SWIM zinc finger 584 610 IPR007527 GO:0008270
Vium6474g00004 788 Pfam FAR1 DNA-binding domain 84 175 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6474g00004 Vium-Chr6474 18559 23287 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium6474g00004 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6474g00004 - - gmx:100782414 1398.65