Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6472g00006 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCTGCGGAGACGTCGGAAGCGGCGGTGCCAACTGATCAGCTCTTGCTCTACCGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACCGCCAAAGAGCGAATCAGCAAAATGCCTCCCTGCGCAGCTGGAAAACGTAGCTCTATATACCGCGGCGTCACCAGGCATAGGTGGACTGGTCGTTACGAAGCTCATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGTTTACTTGGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGGTGGGAGTCGTCATATGGCCGCATATCTGGATCTGATTACTTCAATAGCATGCATTATGGGGATGATTCAGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCATCGGAAGAAAAAAAGCTTGGTTCTGCTGGAGATATTTGCAGTGAGCTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGAAGGCCACACAATGAGAAAAAGCAAAGAAGTTCTTCAGTCTCTGCCTTAAGGATTCTTTCTCAATCTGCTGCTTACAAGAGCTTGCAGGAGAAAGCGTCAAAGAGACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAGTGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATATCTACCCTTTGACGCCATTCTTGTCAGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCCGTACTTCCTGCCGGCCTTTCTCGTACAGATGAGGTTACCAAGACAGAGACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA 1248 0.4463 MASSSSDPGKSAETSEAAVPTDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRISGSDYFNSMHYGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALRILSQSAAYKSLQEKASKRQENSIDNDENENKNTVNKLDHGKAVEKPSNHDGGSDRLDIAMGMSGTMPLQRNIYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVLPAGLSRTDEVTKTETSSTYTMFQPEE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6472g00006 415 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Vium6472g00006 415 MobiDBLite consensus disorder prediction 293 338 - -
Vium6472g00006 415 FunFam AP2-like ethylene-responsive transcription factor 58 127 - -
Vium6472g00006 415 MobiDBLite consensus disorder prediction 296 335 - -
Vium6472g00006 415 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vium6472g00006 415 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Vium6472g00006 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 300 - -
Vium6472g00006 415 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Vium6472g00006 415 Coils Coil 299 319 - -
Vium6472g00006 415 MobiDBLite consensus disorder prediction 256 279 - -
Vium6472g00006 415 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Vium6472g00006 415 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Vium6472g00006 415 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6472g00006 Vium-Chr6472 25036 28859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6472g00006 21 413 AP2-EREBP Transcription Factor Family AT2G41710 62.899 3.82e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6472g00006 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6472g00006 K09285 - gmx:100814117 765.377