Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6472g00005 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCTGCGGAGACGTCGGAAGCGGCGGTGCCAACTGATCAGCTCTTGCTCTACCGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACCGCCAAAGAGCGAATCAGCAAAATGCCTCCCTGCGCAGCTGGAAAACGTAGCTCTATATACCGCGGCGTCACCAGGCATAGGTGGACTGGTCGTTACGAAGCTCATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGTTTACTTGGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGCTATATATGTGGAGCTAGTTCTTCTCTGCTTTGCTCACAGCTACAGATTTTTATGATCTGTCGGTGGGAGTCGTCATATGGCCGCATATCTGGATCTGATTACTTCAATAGCATGCATTATGGTGCAGGGGATGATTCAGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCATCGGAAGAAAAAAAGCTTGGTTCTGCTGGAGATATTTGCAGTGAGCTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGAAGGCCACACAATGAGAAAAAGCAAAGAAGTTCTTCAGTCTCTGCCTTAAGGATTCTTTCTCAATCTGCTGCTTACAAGAGCTTGCAGGAGAAAGCGTCAAAGAGACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAGTGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATATCTACCCTTTGACGCCATTCTTGTCAGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCCGTACTTCCTGCCGGCCTTTCTCGTACAGATGAGGTTACCAAGACAGAGACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA 1314 0.4444 MASSSSDPGKSAETSEAAVPTDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSYICGASSSLLCSQLQIFMICRWESSYGRISGSDYFNSMHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALRILSQSAAYKSLQEKASKRQENSIDNDENENKNTVNKLDHGKAVEKPSNHDGGSDRLDIAMGMSGTMPLQRNIYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVLPAGLSRTDEVTKTETSSTYTMFQPEE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6472g00005 437 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vium6472g00005 437 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Vium6472g00005 437 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Vium6472g00005 437 FunFam AP2-like ethylene-responsive transcription factor 58 127 - -
Vium6472g00005 437 MobiDBLite consensus disorder prediction 318 357 - -
Vium6472g00005 437 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Vium6472g00005 437 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Vium6472g00005 437 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Vium6472g00005 437 Coils Coil 321 341 - -
Vium6472g00005 437 MobiDBLite consensus disorder prediction 278 301 - -
Vium6472g00005 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 322 - -
Vium6472g00005 437 MobiDBLite consensus disorder prediction 315 360 - -
Vium6472g00005 437 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6472g00005 Vium-Chr6472 25036 28862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6472g00005 21 435 AP2-EREBP Transcription Factor Family AT2G41710 60.422 1.74e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6472g00005 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6472g00005 K09285 - gmx:100786651 759.985