Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium646g00044 ATGCGTAATAAAAGCAGCAACCGTGTAACTCCATTTTTAGCCACTCTTTCACAGAAATTTCTGCTGCTTCCATCAGGGTCACTCTTATTACTCTCACTTTCCCCCACGATTGCTGGTGCCACCATGTGTGTGCAGGATGCAGAGAAAGATATGGATAACAACTCAACAAATTCATGGCCTTTGCATTGTCACCTTTTGCTCGCCACCCACACGGACAAAAAAGGATCTTTTTTCACAACTTCAACTCCTGACACCACAGATACCACTGTCCAAAGTTCCTTTCCTCTAGAAAGCATTTATGAGGACGAAGTGATTGCAGAAAAGAAAGAAAATCAGATGAATTTGACCCCGGCTCTTCGATCTGGAGAGTGGTCTGACATAGGAGAACGCCCTTACATGGAGGACACTCATATATGCATCGGAGACTTGGCAAAGAAATTTAATTATAATGCACTTCCTGGGGAAGCTGTTTCCTTTTATGGCGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTACGTGATAATCTGCCAAGATTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGACGCTGCATTTCTAAAATCATCCTCTCAGGAGCCTTCCCTTTCTTCTGGCACAACTGCTTTAACCGCAATTGTATTTGGAAGGTCTTTACTTGTAGCTAATGCGGGAGACTGTCGAGCTGTCTTGTCCCGCCATGGAAGGGCCATAGAAATGTCTAAAGATCATAGGCCAAACTGTGTCAATGAAAGGACACGGGTTTTGTCCCTAGGTGGCTTCATTGACGATGGTTACCTGAATGGGCAGTTAGGTATCACTCGTGCTATTGGAGACTGGCACCTTGAAGGAATGAAGGGAACGAGTGGAAGAGAAGGACCACTGAGTGCTGAACCTGAACTTAAAATGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGACGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTGGATTTTGCTAGGAGGAGGCTACAAGAGCACAATGATGAGAAACTATGCTGCAAGGAAATAGTGCAGGAAGCAATGAAGAGAGAATCAACTGATAACTTGACAGTTGTGATGGTATGTTTTAACTCAGATCCTCCAACACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAAGGACTTCAGAATCTAAGATCCCTGCTAAAAGAATAA 1257 0.432 MRNKSSNRVTPFLATLSQKFLLLPSGSLLLLSLSPTIAGATMCVQDAEKDMDNNSTNSWPLHCHLLLATHTDKKGSFFTTSTPDTTDTTVQSSFPLESIYEDEVIAEKKENQMNLTPALRSGEWSDIGERPYMEDTHICIGDLAKKFNYNALPGEAVSFYGVFDGHGGKSAAQFVRDNLPRFIVEDVNFPLELEKVVKRSFLETDAAFLKSSSQEPSLSSGTTALTAIVFGRSLLVANAGDCRAVLSRHGRAIEMSKDHRPNCVNERTRVLSLGGFIDDGYLNGQLGITRAIGDWHLEGMKGTSGREGPLSAEPELKMMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAMKRESTDNLTVVMVCFNSDPPTPVVVERTRVRRSISAEGLQNLRSLLKE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium646g00044 418 PANTHER PROTEIN PHOSPHATASE 2C 107 383 IPR015655 GO:0004722|GO:0006470
Vium646g00044 418 SMART PP2C_SIG_2 135 385 IPR001932 -
Vium646g00044 418 Pfam Protein phosphatase 2C 132 377 IPR001932 -
Vium646g00044 418 SUPERFAMILY PP2C-like 113 387 IPR036457 -
Vium646g00044 418 CDD PP2Cc 120 385 IPR001932 -
Vium646g00044 418 ProSitePatterns PPM-type phosphatase domain signature. 159 167 IPR000222 GO:0043169
Vium646g00044 418 ProSiteProfiles PPM-type phosphatase domain profile. 120 385 IPR001932 -
Vium646g00044 418 SMART PP2C_4 110 383 IPR001932 -
Vium646g00044 418 FunFam Probable protein phosphatase 2C 22 104 388 - -
Vium646g00044 418 Gene3D - 101 389 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium646g00044 Vium-Chr646 433455 437125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium646g00044 101 416 PP2C-type Phosphatase Gene Family AT2G25620 57.862 3.15e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vium646g00044 PP2C 4.1e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium646g00044 K14803 - gmx:100813157 629.017