LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium646g00038	ATGTCCGTCGCTACTTCTCCTCTGCATCAAATACAATTTCTCAAATGTCCTCGCTTTTCTTCCAAATCCCACTTTCGCCCTCGTCGCTTCCACTCCCTAACCCAGAGAACCATTCCTGCAATCTCCGCAGTTGCAGCGGAAACGGAGTTGCATACACAGCAGGATCAATCAGTTGAAGCAGATGTGTTTGCTTGCCCAATATGTTATGAACCATTGATAAGAAAAGGCTCTCCTGGTCTGAATTTATCAGCAATTTATAGATCTGGTTTCATGTGTAAGATATGTAAGAAGTCATACACTAGCAAGGACAGGTATCTGGATTTGACTGTGACTGCTGGATTGAAAGATTACACTGAAATTCAACCAGCTCGGACTGAGCTTTTCAGGAGTCCCCTTGTTTCCTTCTTATATGAAAGAGGATGGCGTCAGAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAAGAGTACTTTAAATCTGCTAGAGGTGGACTTCTTGTTGATGTTAGCTGTGGCAGTGGTTTATTTTCCAGAAAATTCGTAAAATCTGGAACCTATTCCGGAGTCGTTGCACTAGATTTCTCTGAAAATATGCTTCGTCAATGTTATGATTTCATTAAGAAAGATGACACACTTTCAACAACTAATATTGCTCTCGTAAGGGCAGATGTTTCTAGGCTTCCCTTCGCATCAGGTTCAGTTGATGCTGTTCATGCTGGTGCAGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGATACTAAGAAGTGGTGGAGTTTTTGTTGGAAGCACTTTTCTGCGTTACAGTTCATCAACTCCCTGGTTTATACGCCCTTTCAGAGAGAGGACTCCACAAGGCTATGGCTATTTAACAGAGGAAGAGATCAGAGACCTTTGCACTTCGTGTGGTCTTACTAATTACTCAAGCAAGACTCAGCAGGCTTTTATTATGTTTACAGCTCAGAAGCCATAA	1008	0.4296	MSVATSPLHQIQFLKCPRFSSKSHFRPRRFHSLTQRTIPAISAVAAETELHTQQDQSVEADVFACPICYEPLIRKGSPGLNLSAIYRSGFMCKICKKSYTSKDRYLDLTVTAGLKDYTEIQPARTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFKSARGGLLVDVSCGSGLFSRKFVKSGTYSGVVALDFSENMLRQCYDFIKKDDTLSTTNIALVRADVSRLPFASGSVDAVHAGAALHCWPSPSNAVAEITRILRSGGVFVGSTFLRYSSSTPWFIRPFRERTPQGYGYLTEEEIRDLCTSCGLTNYSSKTQQAFIMFTAQKP	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium646g00038	335	PANTHER	METHYLTRANSFERASE	89	320	-	-
	Vium646g00038	335	CDD	AdoMet_MTases	172	273	-	-
	Vium646g00038	335	Pfam	Methyltransferase domain	173	273	IPR013216	GO:0008168
	Vium646g00038	335	FunFam	Putative methyltransferase, chloroplastic	128	334	-	-
	Vium646g00038	335	Gene3D	Vaccinia Virus protein VP39	128	334	IPR029063	-
	Vium646g00038	335	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	134	331	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium646g00038	Vium-Chr646	378438	381956	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Vium646g00038		Methyltransf_11	9.5e-20	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium646g00038	-		-	gmx:100798970	608.601