Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium646g00018 ATGGGGAAGAACAAGAAGCAGGTAGGAGAAACAAGTGAAGATAGAGGAGATCATAAGAAGACAGAAGATGAAAGCTCCAGATCATATGACAACGATACTTTGGGGTTTATATCAATGGCTCAAGATTTGAAGGATGAAGGGAACAAGCTGTTTCAGAAGCGGGATGTTGAGGGGGCTTTGGCAAAGTATGAGAAGGCCCTGAAATTGCTTCCAAGAAATCATCTTGATATTTCTTATTTGAGGAGTAACATGGCTGCGTGCTACATGCAGATGGGTCTTCGTGAGTATCCTAAAGCAATCAATGAATGCAATTTGGCTCTTGAAGCATCACCAAAATATAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAAGCTTTAAATAGGTTGGATTTTGCGCTGAGAGATGTTAGCACTGTTTTAAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCGGATAAGGTGAAGCATGCTCTCGAAGTTAAGGGATTAGTAGTAAATGATACGGAAATTGAGTTGCCTCCAGACTATGCTGGACCTCCTGATTTACGTCTGGAAAAGGTTTACAAAGAAAAGATTCACAAGAAGAAAAAAAACAAAGAGAAGGTGAAGTCTACTGATAAAATTGAAGAAAAGAAAAGTGAGGAGAAATTAGATGAGAATAAAGCTGAGGACAGTCGGAAAGATAAGAAGGCTAAGAAATATAAAAAGAAGAAGGCCAAGGAAAAAAATGTTGAGAAAAAGGATGACGTTAAGGAAGTTATTGAGGAAAAAAGTAATGGTAGAAGTGATGATATACCTAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAGATTATTTGTGATCGTTTCCCTAGACTAGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACTGGGTTCTATTCGGCTGTACATAGTGGAAGTTAATCCAGAACATGATCCATTCTTTGTGAAGCTTAATGCAAAGAGTGGAGAAAAGGCTAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAGGCAAAGGACATTATTTGCTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCACAACTGTTCAAGAACCATGTAGGGTTGGAAGCCGACAGATATTTATATTTTCATGAATTTGGTATGAAGCTCTATTCAGAGGTTGTGGAGGAGACAATTATAAGTGAGGAAGCTCAAGGCGTGCTTGATGTTGCTGAAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGCGCAAGGAAAAAAATTTATTTTACAGGAGATTCTTCTAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGAATGGGCACACGAAGAATATGAAAAAGCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTGTATGAAGGCTTCTTGGCCCTTGGCCAACAGCTGTTTGAGCAAGCCAAGCTTTCTTGGAATTATGCACTCTGTTCTAAGGTAGATTTATCAACATGGTCCTCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAGTGTGGAGAAAGGAATGCTTATATGGGAAGAATCAGGAGAGCAGCAGTTGCTGGAAACTTCCAATCCGAAGGAGATTTTATTACATTTGAAGGACATGGGATTGGACCAACTATTCAAAAATATGTCAGCACATGAAATTGCTACACAGGTGGCAGATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTATATGAGCGCTCAATAGTGGAATTCAAGTTAGGGATACCGGGATGGAATGAAACTCTTGAAGTTGCAGCTGAGAAGTTTCAACTTGCTGGAACTTCTACAACAGATATATCTCTAATGTTGAAGAATCACTGTTCAAATAACTCGGTTGTAGACGGTCTTGGAGTCAACATTGATGAAATAGTCCGACCATGGAATGAGATGTACAACGCTAAAAAGTTGCAGAAAGGTGTGCCATCATTCCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATACTCCATGCCTTTGAGCTTGTATGA 2178 0.399 MGKNKKQVGETSEDRGDHKKTEDESSRSYDNDTLGFISMAQDLKDEGNKLFQKRDVEGALAKYEKALKLLPRNHLDISYLRSNMAACYMQMGLREYPKAINECNLALEASPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEVKGLVVNDTEIELPPDYAGPPDLRLEKVYKEKIHKKKKNKEKVKSTDKIEEKKSEEKLDENKAEDSRKDKKAKKYKKKKAKEKNVEKKDDVKEVIEEKSNGRSDDIPKKAAKLVFGEDIRWAELPVNCSLFQLREIICDRFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSLGSIRLYIVEVNPEHDPFFVKLNAKSGEKASIANSPVNGSVVKAKDIICSSCIEDWIIQFAQLFKNHVGLEADRYLYFHEFGMKLYSEVVEETIISEEAQGVLDVAEGKFQEMAALALFNWGNVHMSSARKKIYFTGDSSKEHLHEQIRSLYEWAHEEYEKAGEKYETAIEIKPDLYEGFLALGQQLFEQAKLSWNYALCSKVDLSTWSSSTEVLQLYNSAEDSVEKGMLIWEESGEQQLLETSNPKEILLHLKDMGLDQLFKNMSAHEIATQVADTRSQMNLLWGTILYERSIVEFKLGIPGWNETLEVAAEKFQLAGTSTTDISLMLKNHCSNNSVVDGLGVNIDEIVRPWNEMYNAKKLQKGVPSFRLEPLFRRRISKILHAFELV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium646g00018 725 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Vium646g00018 725 CDD PB1 278 344 - -
Vium646g00018 725 MobiDBLite consensus disorder prediction 1 29 - -
Vium646g00018 725 MobiDBLite consensus disorder prediction 198 252 - -
Vium646g00018 725 SUPERFAMILY TPR-like 40 528 IPR011990 GO:0005515
Vium646g00018 725 Coils Coil 239 259 - -
Vium646g00018 725 SMART tpr_5 78 113 IPR019734 GO:0005515
Vium646g00018 725 SMART tpr_5 114 147 IPR019734 GO:0005515
Vium646g00018 725 SMART tpr_5 40 73 IPR019734 GO:0005515
Vium646g00018 725 Gene3D - 270 346 - -
Vium646g00018 725 SMART PB1_new 270 347 IPR000270 GO:0005515
Vium646g00018 725 MobiDBLite consensus disorder prediction 205 232 - -
Vium646g00018 725 PANTHER PROTEIN CLMP1 3 723 IPR044517 -
Vium646g00018 725 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Vium646g00018 725 SUPERFAMILY CAD & PB1 domains 273 355 - -
Vium646g00018 725 Coils Coil 197 217 - -
Vium646g00018 725 MobiDBLite consensus disorder prediction 1 30 - -
Vium646g00018 725 Gene3D Tetratricopeptide repeat domain 36 172 IPR011990 GO:0005515
Vium646g00018 725 Pfam PB1 domain 274 334 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium646g00018 Vium-Chr646 137743 146091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium646g00018 21 147 Calmodulin-binding Proteins AT3G25230 33.333 2.37e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium646g00018 K26538 - gmx:100820306 1085.09