LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium646g00012	ATGCATACGTGTCATGCCTCAATGGTATGGCATCTCCATAATACCACACCCTTTACCCTATCCGTTCTTCTCTCTCTATATGCCTCACTCTCTCTTTCTCTCTCTTCACTCTCCGCCATGCCCCCAGCCGCCGGAGCCGTCGCGTTGCACTCTTCCCTTTGCTCCACCGCTTCTGAGAAACCGTATTCTCCTCTAAGATCAACCCTTCTGCATGTGGCACCTAAACCCAAAAGCCTCCTCCAAAGTCACCCACTTTACCCTCCAACCCACGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTTGAGGTAATGGGTATTGATGCAGGCAAAGCACTCTCCCAAAACCCCGATCTTCGCACAGCCACCATGGAATCCATACAGTCCATCATCACCTTCCTTTTCTCCAATGGCATTCTTGAGAAGGACCTGCCCAGAATCTTTGGCATGTGCCCCAAGATTCTCACTGCTGACATCAAAACTGATCTTACCCCAGTTTTTGATTTCATCTTGAATGAACTCAAAGTCCCCGAAAATAGCTTCAGGAGGGTGATCAATAAGTGCCCAAGATTGCTTACATCCAGTGTTAAAGACCAGCTCAGGCCAGCTTTGGTTTACCTAAGGAGACTTGGATTCAAGGATTTGGGGGCCTTGGCTTATCAAGATTCTGTTCTCTTGGTGTCTAATGTAGAACACACCCTCATCCCTAAACTTAGATTTTTGGAGACTTTGGGACTTTCCAAGGATGAGATTAGGAATATGGTGTTGAGATGCCCGGCACTGCTCACTTTCAGTATAGAGAATAATTTTCAGCCAAAGTATGACTATTTTGCTGGGGAAATGGGGAGTAAAGTGGAGGAGCTGAAAGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAAAACAGGATAAAACCTAGACACACCGAGGTTGTGCAGAGTGGTATCACTTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGAATTTAGGGAGTTGTTAAAGCAGGGAGGTGGCTGA	1026	0.46	MHTCHASMVWHLHNTTPFTLSVLLSLYASLSLSLSSLSAMPPAAGAVALHSSLCSTASEKPYSPLRSTLLHVAPKPKSLLQSHPLYPPTHAKLSLEFKEKILCLEVMGIDAGKALSQNPDLRTATMESIQSIITFLFSNGILEKDLPRIFGMCPKILTADIKTDLTPVFDFILNELKVPENSFRRVINKCPRLLTSSVKDQLRPALVYLRRLGFKDLGALAYQDSVLLVSNVEHTLIPKLRFLETLGLSKDEIRNMVLRCPALLTFSIENNFQPKYDYFAGEMGSKVEELKEFPQYFAFSLENRIKPRHTEVVQSGITLPLSVMLKSTDEEFRELLKQGGG	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium646g00012	341	Pfam	mTERF	227	332	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	Pfam	mTERF	104	215	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	SMART	mt_12	184	215	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	SMART	mt_12	287	318	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	SMART	mt_12	218	249	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	SMART	mt_12	147	179	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	SMART	mt_12	254	286	IPR003690	GO:0003690\|GO:0006355
	Vium646g00012	341	FunFam	Transcription termination factor MTEF1, chloroplastic	172	339	-	-
	Vium646g00012	341	Gene3D	Transcription termination factor 3, mitochondrial	121	338	IPR038538	-
	Vium646g00012	341	PANTHER	CGI-12 PROTEIN-RELATED	17	334	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium646g00012	Vium-Chr646	59486	60637	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Vium646g00012		mTERF	1.8e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium646g00012	K15031		-	gmx:100788221	534.258