Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium646g00007 ATGAGCTTTGGAAGCAGAGGGAAGCTGAAAGATACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAGGAGGGACAAGGTACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAATTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCTGGAGAAAAAATGACTGCATATCTGTCAAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTCAGTTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGATGTTAATAAATTTGATTGGGGTTGATGCAACAACCCTTTTCACTCCAGCTTCTGGGGGTTACCTAGCTAAAGCTGTGGCTTCCAGGGAAATTTCTCTTCTGAACCCGATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCCATACTGCATAGGATCGATGTTGGGGTTGTGATTGATTTGGAGCCTGCGCGGTTGAGTGATCCAGCATTGTCACTTGCCGGGGCAGTTCAATCACAGAAGCTGGCTGTGAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCTTGTTGTGTGACGCAGTTGTTGAGGAAGTGCATAAGCTTACTGGATATGACAGGGTAATGGTTTATAAGTTTCATGAGGATGATCATGGTGAAGTTGTAGCTGAGATTAGGAGGTCGGATTTGGAGCCTTACCTGGGTTTACATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAGAACCGGGTTAGGATTATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAATTCAACACTTAGGTTACCACATGGTTGTCACACACAGTACATGGCCAACATGGGATCAATTGCTTCTCTGGTGATGGCAATTATAGTCAATGGAAAGAATGAAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGTTATGTTTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTATATGGAGATTCAATTGGCATCACAAATGGCGGAAAAGAGAATGCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACTCAGTCTCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTATTTTATGATGGAATATGCTGGTTGTTAGGTACATCCCCAACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGATTCAACAGGTTTGACAACAGATAGTTTAGCTGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGATCATCATTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCCATTCACTCATTACAACTAATGATCAGAGATTCTTTCCAAGACACTGAGATCACCGGTCCAAAGCCTTCAAACTATGTGCAGAAAACTGACACTTCAACTGGAGCGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCCGATTTTTGGGGTTGATTCAGGTGTTGTAATCAATGGATGGAATTCAAAGATTGCTGAACTGACAGGTTTACAAGTCATTTTAGCTATGGGGAAATCCATGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAAAAATACTCTACGCAGAGCCTTGCAAGGAGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAGCACTTTGGGCTTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAATGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATAGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAANCCTTCAAATCACCGACACAGATTTATTTACACAACCTCAAACCAATGATGAAGTTTAGTGTTTCATAG 2433 0.4316 MSFGSRGKLKDTSLSTSAESNMNSRRDKVLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSKMLINLIGVDATTLFTPASGGYLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDAVVEEVHKLTGYDRVMVYKFHEDDHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRIICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKNETRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRMLKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGICWLLGTSPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLMIRDSFQDTEITGPKPSNYVQKTDTSTGAMDELSSVALEMVRLIETATVPIFGVDSGVVINGWNSKIAELTGLQVILAMGKSMVNEIIHADSCDTFKNTLRRALQGEEDKSVELKIKHFGLQQQQKVVYLMVNACTSRDYTDSVVGVCFVGQDITYEKMVQDKFIKLEGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEXFKSPTQIYLHNLKPMMKFSVS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium646g00007 810 Gene3D PAS domain 605 737 - -
Vium646g00007 810 Gene3D - 200 550 IPR029016 -
Vium646g00007 810 SUPERFAMILY GAF domain-like 199 385 - -
Vium646g00007 810 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Vium646g00007 810 SMART gaf_1 219 399 IPR003018 GO:0005515
Vium646g00007 810 Gene3D - 394 567 IPR043150 -
Vium646g00007 810 SUPERFAMILY GAF domain-like 397 575 - -
Vium646g00007 810 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 718 IPR035965 -
Vium646g00007 810 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Vium646g00007 810 Gene3D PAS domain 751 796 - -
Vium646g00007 810 PANTHER OS08G0260000 PROTEIN 71 772 - -
Vium646g00007 810 ProSiteProfiles PAS repeat profile. 738 783 IPR000014 -
Vium646g00007 810 SMART pas_2 737 802 IPR000014 -
Vium646g00007 810 SMART pas_2 606 673 IPR000014 -
Vium646g00007 810 CDD PAS 615 722 IPR000014 -
Vium646g00007 810 Pfam PAS fold 73 186 IPR013654 GO:0006355
Vium646g00007 810 NCBIfam PAS domain S-box protein 611 730 IPR000014 -
Vium646g00007 810 FunFam Phytochrome 600 732 - -
Vium646g00007 810 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Vium646g00007 810 SUPERFAMILY PYP-like sensor domain (PAS domain) 721 783 IPR035965 -
Vium646g00007 810 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Vium646g00007 810 FunFam Phytochrome 394 524 - -
Vium646g00007 810 ProSiteProfiles PAC domain profile. 678 734 IPR000700 -
Vium646g00007 810 Pfam GAF domain 219 389 IPR003018 GO:0005515
Vium646g00007 810 Gene3D PAS domain 77 322 - -
Vium646g00007 810 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Vium646g00007 810 CDD PAS 749 785 IPR000014 -
Vium646g00007 810 Pfam PAS fold 607 722 IPR013767 GO:0006355
Vium646g00007 810 Pfam PAS fold 738 790 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium646g00007 Vium-Chr646 26781 29985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium646g00007 15 790 Histidine Kinase Gene Family AT4G18130 67.090 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium646g00007 K12123 - gmx:100808192 1459.51