Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium646g00006 ATGAGCTTTGGAAGCAGAGGGAAGCTGAAAGATACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAGGAGGGACAAGGTACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAATTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCTGGAGAAAAAATGACTGCATATCTGTCAAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTCAGTTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGATGTTAATAAATTTGATTGGGGTTGATGCAACAACCCTTTTCACTCCAGCTTCTGGGGGTTACCTAGCTAAAGCTGTGGCTTCCAGGGAAATTTCTCTTCTGAACCCGATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCCATACTGCATAGGATCGATGTTGGGGTTGTGATTGATTTGGAGCCTGCGCGGTTGAGTGATCCAGCATTGTCACTTGCCGGGGCAGTTCAATCACAGAAGCTGGCTGTGAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCTTGTTGTGTGACGCAGTTGTTGAGGAAGTGCATAAGCTTACTGGATATGACAGGGTAATGGTTTATAAGTTTCATGAGGATGATCATGGTGAAGTTGTAGCTGAGATTAGGAGGTCGGATTTGGAGCCTTACCTGGGTTTACATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAGAACCGGGTTAGGATTATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAATTCAACACTTAGGTTACCACATGGTTGTCACACACAGTACATGGCCAACATGGGATCAATTGCTTCTCTGGTGATGGCAATTATAGTCAATGGAAAGAATGAAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGTTATGTTTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTATATGGAGATTCAATTGGCATCACAAATGGCGGAAAAGAGAATGCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACTCAGTCTCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTATTTTATGATGGAATATGCTGGTTGTTAGGTACATCCCCAACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGATTCAACAGGTTTGACAACAGATAGTTTAGCTGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGATCATCATTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCCATTCACTCATTACAACTAATGATCAGAGATTCTTTCCAAGACACTGAGATCACCGGTCCAAAGCCTTCAAACTATGTGCAGAAAACTGACACTTCAACTGGAGCGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCCGATTTTTGGGGTTGATTCAGGTGTTGTAATCAATGGATGGAATTCAAAGATTGCTGAACTGACAGGTTTACAAGTCATTTTAGCTATGGGGAAATCCATGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAAAAATACTCTACGCAGAGCCTTGCAAGTTTTTGCAGGAGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAGCACTTTGGGCTTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAATGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATAGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTTGTAACGCCAGACCTGAATCAGTCATCTGA 2433 0.4324 MSFGSRGKLKDTSLSTSAESNMNSRRDKVLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSKMLINLIGVDATTLFTPASGGYLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDAVVEEVHKLTGYDRVMVYKFHEDDHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRIICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKNETRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRMLKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGICWLLGTSPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLMIRDSFQDTEITGPKPSNYVQKTDTSTGAMDELSSVALEMVRLIETATVPIFGVDSGVVINGWNSKIAELTGLQVILAMGKSMVNEIIHADSCDTFKNTLRRALQVFAGEEDKSVELKIKHFGLQQQQKVVYLMVNACTSRDYTDSVVGVCFVGQDITYEKMVQDKFIKLEGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGCNARPESVI 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium646g00006 810 ProSiteProfiles PAS repeat profile. 604 673 IPR000014 -
Vium646g00006 810 SUPERFAMILY GAF domain-like 199 385 - -
Vium646g00006 810 ProSiteProfiles PAS repeat profile. 741 786 IPR000014 -
Vium646g00006 810 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Vium646g00006 810 SMART gaf_1 219 399 IPR003018 GO:0005515
Vium646g00006 810 Pfam GAF domain 219 389 IPR003018 GO:0005515
Vium646g00006 810 SMART pas_2 606 673 IPR000014 -
Vium646g00006 810 SMART pas_2 740 808 IPR000014 -
Vium646g00006 810 SUPERFAMILY GAF domain-like 397 575 - -
Vium646g00006 810 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Vium646g00006 810 Pfam PAS fold 607 725 IPR013767 GO:0006355
Vium646g00006 810 Pfam PAS fold 741 794 IPR013767 GO:0006355
Vium646g00006 810 Pfam PAS fold 73 186 IPR013654 GO:0006355
Vium646g00006 810 MobiDBLite consensus disorder prediction 1 23 - -
Vium646g00006 810 PANTHER OS08G0260000 PROTEIN 71 775 - -
Vium646g00006 810 Gene3D - 200 550 IPR029016 -
Vium646g00006 810 CDD PAS 752 788 IPR000014 -
Vium646g00006 810 FunFam Phytochrome 600 735 - -
Vium646g00006 810 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Vium646g00006 810 ProSiteProfiles PAC domain profile. 681 737 IPR000700 -
Vium646g00006 810 Gene3D PAS domain 77 322 - -
Vium646g00006 810 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Vium646g00006 810 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 721 IPR035965 -
Vium646g00006 810 FunFam Phytochrome 394 524 - -
Vium646g00006 810 Gene3D - 394 567 IPR043150 -
Vium646g00006 810 NCBIfam PAS domain S-box protein 611 733 IPR000014 -
Vium646g00006 810 SUPERFAMILY PYP-like sensor domain (PAS domain) 724 787 IPR035965 -
Vium646g00006 810 Gene3D PAS domain 600 743 - -
Vium646g00006 810 Gene3D PAS domain 754 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium646g00006 Vium-Chr646 22769 26293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium646g00006 15 800 Histidine Kinase Gene Family AT4G18130 66.750 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium646g00006 K12123 - gmx:100808192 1472.6