Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium646g00005 ATGAGCTTTGGAAGCAGAGGGAAGCTGAAAGATACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAGGAGGGACAAGGTACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAATTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCTGGAGAAAAAATGACTGCATATCTGTCAAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTCAGTTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGATGTTAATAAATTTGATTGGGGTTGATGCAACAACCCTTTTCACTCCAGCTTCTGGGGGTTACCTAGCTAAAGCTGTGGCTTCCAGGGAAATTTCTCTTCTGAACCCGATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCCATACTGCATAGGATCGATGTTGGGGTTGTGATTGATTTGGAGCCTGCGCGGTTGAGTGATCCAGCATTGTCACTTGCCGGGGCAGTTCAATCACAGAAGCTGGCTGTGAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCTTGTTGTGTGACGCAGTTGTTGAGGAAGTGCATAAGCTTACTGGATATGACAGGGTAATGGTTTATAAGTTTCATGAGGATGATCATGGTGAAGTTGTAGCTGAGATTAGGAGGTCGGATTTGGAGCCTTACCTGGGTTTACATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAGAACCGGGTTAGGATTATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAATTCAACACTTAGGTTACCACATGGTTGTCACACACAGTACATGGCCAACATGGGATCAATTGCTTCTCTGGTGATGGCAATTATAGTCAATGGAAAGAATGAAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGTTATGTTTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTATATGGAGATTCAATTGGCATCACAAATGGCGGAAAAGAGAATGCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACTCAGTCTCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTATTTTATGATGGAATATGCTGGTTGTTAGGTACATCCCCAACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGATTCAACAGGTTTGACAACAGATAGTTTAGCTGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGATCATCATTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCCATTCACTCATTACAACTAATGATCAGAGATTCTTTCCAAGACACTGAGATCACCGGTCCAAAGCCTTCAAACTATGTGCAGAAAACTGACACTTCAACTGGAGCGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCCGATTTTTGGGGTTGATTCAGGTGTTGTAATCAATGGATGGAATTCAAAGATTGCTGAACTGACAGGTTTACAAGTCATTTTAGCTATGGGGAAATCCATGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAAAAATACTCTACGCAGAGCCTTGCAAGTTTTTGCAGGAGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAGCACTTTGGGCTTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAATGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATAGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACCCTGACTAATTTTATGATTTTAATATACCGTGGAATCAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTGTGGAGAGTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATACTTGGCTGTTTTTGCTTCTTGCAGGTTGTAACGCCAGACCTGAATCAGTCATCTGAAGAACACAAGCCAAGAGGCAGAGAAAACATTTCTGAATCGAAAGAGTTAGCTTATATACTACAAGAGATGAAGAAACCTTTAAATGGCATACGATTCACGCACAAACTTTTGGAAAGTACAACTGTTTCAGAAAACCAAAAACAATTTCTTGACACCAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAAATTTAGGAAGTATTAATGAAGGCACTTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATATTGATAAGAGAAAAGAACTTGCAACTGTTTCATGAAATTCCTGATGAAATAAAAGTGCTTTCTTTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAGCCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAGTTTATCCATCTGAAGTTCAGAATGACACATTCTGGTCAAGGTCTTCCTTCAGATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGAATACACAGGAAGGTCTAGGACTATACATGTCCAGAAAAATCCTCAGTAGGATGAGTGGTCATGTCCACTACGTAAGAGAACAAAATAAGTGTTATTTTCTCATTGATCTTGACATTAGAACAAGAAAAGAAAGGCAAAAGAATTTGCATGCAGAGACAAGCATGTTAAATTAG 3375 0.4119 MSFGSRGKLKDTSLSTSAESNMNSRRDKVLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSKMLINLIGVDATTLFTPASGGYLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDAVVEEVHKLTGYDRVMVYKFHEDDHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRIICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKNETRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRMLKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGICWLLGTSPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLMIRDSFQDTEITGPKPSNYVQKTDTSTGAMDELSSVALEMVRLIETATVPIFGVDSGVVINGWNSKIAELTGLQVILAMGKSMVNEIIHADSCDTFKNTLRRALQVFAGEEDKSVELKIKHFGLQQQQKVVYLMVNACTSRDYTDSVVGVCFVGQDITYEKMVQDKFIKLEGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILIYRGISGQDSEKLPFGFFDRNGEFVESYITANKRIDAGGNILGCFCFLQVVTPDLNQSSEEHKPRGRENISESKELAYILQEMKKPLNGIRFTHKLLESTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEGTLQLNMEEFVLGNILDAIVSQVMILIREKNLQLFHEIPDEIKVLSLYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGLPSDVLHDMFEGGNQWNTQEGLGLYMSRKILSRMSGHVHYVREQNKCYFLIDLDIRTRKERQKNLHAETSMLN 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium646g00005 1124 Gene3D PAS domain 754 865 - -
Vium646g00005 1124 ProSiteProfiles PAS repeat profile. 604 673 IPR000014 -
Vium646g00005 1124 Gene3D PAS domain 598 740 - -
Vium646g00005 1124 ProSiteProfiles PAS repeat profile. 741 786 IPR000014 -
Vium646g00005 1124 PANTHER OS08G0260000 PROTEIN 71 943 - -
Vium646g00005 1124 Gene3D PAS domain 77 322 - -
Vium646g00005 1124 SMART gaf_1 219 399 IPR003018 GO:0005515
Vium646g00005 1124 FunFam Phytochrome 394 524 - -
Vium646g00005 1124 Gene3D - 394 567 IPR043150 -
Vium646g00005 1124 Pfam PAS fold 73 186 IPR013654 GO:0006355
Vium646g00005 1124 SMART pas_2 606 673 IPR000014 -
Vium646g00005 1124 SMART pas_2 740 810 IPR000014 -
Vium646g00005 1124 SUPERFAMILY GAF domain-like 199 385 - -
Vium646g00005 1124 MobiDBLite consensus disorder prediction 1 23 - -
Vium646g00005 1124 FunFam Phytochrome 754 862 - -
Vium646g00005 1124 NCBIfam PAS domain S-box protein 611 733 IPR000014 -
Vium646g00005 1124 CDD HATPase_Phy-like 993 1106 IPR044767 -
Vium646g00005 1124 ProSiteProfiles Histidine kinase domain profile. 889 1108 IPR005467 -
Vium646g00005 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Vium646g00005 1124 CDD PAS 752 862 IPR000014 -
Vium646g00005 1124 SMART HisKA_10 882 947 IPR003661 GO:0000155|GO:0007165
Vium646g00005 1124 Pfam GAF domain 219 389 IPR003018 GO:0005515
Vium646g00005 1124 CDD HisKA 882 937 IPR003661 GO:0000155|GO:0007165
Vium646g00005 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 721 IPR035965 -
Vium646g00005 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Vium646g00005 1124 FunFam Phytochrome 945 1112 - -
Vium646g00005 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 994 1101 IPR003594 -
Vium646g00005 1124 Gene3D - 200 550 IPR029016 -
Vium646g00005 1124 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Vium646g00005 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 857 IPR035965 -
Vium646g00005 1124 Pfam PAS fold 607 725 IPR013767 GO:0006355
Vium646g00005 1124 Pfam PAS fold 741 861 IPR013767 GO:0006355
Vium646g00005 1124 SMART HKATPase_4 994 1108 IPR003594 -
Vium646g00005 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1106 IPR036890 -
Vium646g00005 1124 ProSiteProfiles PAC domain profile. 681 737 IPR000700 -
Vium646g00005 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Vium646g00005 1124 Gene3D - 925 1100 IPR036890 -
Vium646g00005 1124 PIRSF Phytochrome_conventional 7 1115 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vium646g00005 1124 Pfam His Kinase A (phospho-acceptor) domain 884 945 IPR003661 GO:0000155|GO:0007165
Vium646g00005 1124 FunFam Phytochrome 600 735 - -
Vium646g00005 1124 SUPERFAMILY GAF domain-like 397 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium646g00005 Vium-Chr646 21121 26291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium646g00005 15 1108 Histidine Kinase Gene Family AT4G18130 62.387 0.0 1447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium646g00005 K12123 - gmx:100808192 2059.65