Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium646g00001 ATGAGGCAGGCTTTTGATCCTTCTTCTTTTGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATTGGGGAATGGTACGTGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGAATTTAAGAAGGTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGGTACTCATGCTGTTGGACCTGTGCTTCCTGATGACGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACCTTAGTGGATTGCCTGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCGCAGGAAGGTCTCTCTGTGGGTATTTCTAAGTTAAGCTTTGCTGATAGTACTGTTGGCAATGGTTTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCACTTTTTGAGCTATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGTTTTGTTATGATATCCTATTATGACATCCGTGCTGCTAGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCGGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTCATTGAATTTTATGACGTCAGAGCTGCAGAAGCAGCTCTGAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGAAGAAATTTGATGCTCCAGTTGAACCAAGAGCTTGATCAAGATGAATCTCGGAGTTTCCGATATCAAGTGAGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATCCTGAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTACAACCACAGGTATCTAATACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGGAAGAAGCAGTCAAGGAGAGAACATATTTACTGGTTTGAGTTCTTCACAAGGAGCTAGTTTTCAATCACATTCACTCCCTGAGCCAAAATTCAGCCAGTATCGTGGAGCGTTGTCCTCATTTGTGCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATTTTCTACTCAGAATAGCTCTTTTGTTGGTTCATCACAGCATCATAACAATCATCACGTTGGCTCTGCTCCATCCGGTTTGCCTTTTGAGAGACACTTTGGTTTCCAACCCGAGTCATCTGAAACATCATTCATGAATAATGTTGGTTATGGAGGCATGAGTTTAGGGCACACAGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATGCTAACATTACTATCCCAAGAAATATAACTGATAATGGGTCATCAAACTTCAGAATGAGATCTCCCAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTTCCACTTTGGAGGGTTTGGCTGATCGTGCTCGGGGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGATTTGGATAAAATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAACAAATACACCTCAAAAATGTTATTAGCCGCCATTGATGAAAATCACAGGGGTACTTACGATTTTCTCTACCTGCCAATTGACTTTAAGAATAAATGCAACGTCGGCTATGCATTCATCAATATGCTGTCACCTTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGACTGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGTCCTATTCTTTTCCACTCAGAGGGTTCTGAAGCGGGTGATCTGATTGTGCAAGAGCATCTTCCCGCCAACCCCAACAATGTAAACATTCAGGGACTAAGGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGGAGCCCTCCAAACACAGACCCTTCTGCAAACTTGGATGCAAAATAG 2583 0.4224 MRQAFDPSSFGPSKIPSIKIPGKLGNGTWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSEFKKVHQDAEGDGSLEDGGTHAVGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQEGLSVGISKLSFADSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVSSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQVSNTVKAAAIGNDLGRSSQGENIFTGLSSSQGASFQSHSLPEPKFSQYRGALSSFVPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFTSNGKSHAFPFSTQNSSFVGSSQHHNNHHVGSAPSGLPFERHFGFQPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNANITIPRNITDNGSSNFRMRSPRLSPVYLGNGPYPGLLPSTLEGLADRARGRWIENNVSQADSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPANPNNVNIQGLRSSELHSSDFAGSPPNTDPSANLDAK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium646g00001 860 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Vium646g00001 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Vium646g00001 860 Gene3D - 278 377 IPR012677 -
Vium646g00001 860 MobiDBLite consensus disorder prediction 839 854 - -
Vium646g00001 860 Pfam RNA recognition motif 2 694 790 IPR007201 -
Vium646g00001 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Vium646g00001 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Vium646g00001 860 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Vium646g00001 860 SUPERFAMILY RNA-binding domain, RBD 696 780 IPR035979 GO:0003676
Vium646g00001 860 CDD RRM3_MEI2_like 697 782 IPR034454 -
Vium646g00001 860 CDD RRM2_MEI2_like 278 348 - -
Vium646g00001 860 MobiDBLite consensus disorder prediction 82 101 - -
Vium646g00001 860 SMART rrm1_1 280 348 IPR000504 GO:0003723
Vium646g00001 860 SMART rrm1_1 195 263 IPR000504 GO:0003723
Vium646g00001 860 SMART rrm1_1 696 772 IPR000504 GO:0003723
Vium646g00001 860 MobiDBLite consensus disorder prediction 839 860 - -
Vium646g00001 860 Gene3D - 183 277 IPR012677 -
Vium646g00001 860 CDD RRM1_MEI2_like 193 269 IPR034453 -
Vium646g00001 860 MobiDBLite consensus disorder prediction 1 23 - -
Vium646g00001 860 FunFam Protein MEI2-like 1 278 373 - -
Vium646g00001 860 PANTHER RNA RECOGNITION MOTIF-CONTAINING 41 812 - -
Vium646g00001 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium646g00001 Vium-Chr646 12513 19647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium646g00001 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 2.00e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium646g00001 - - gmx:100800877 1582