Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6469g00001 ATGTTTCATCTGCTTCAATTCACGTGCGTGCTGTTTCTCCTGCTTCCACACCCTTCATCTGCTAAGACATCACAGCATAACTGCTACACCAAGGACTCAACTTCCCTGGAACTGATCATGTGCATGATCCTTCTGAAACTGCTACTCTTCCTCACATGGATTTCTTCTCCATCTCTTTCCACCTCCATGACCCAGCTTGACACTCTCTTGGCCATCAGAGACTCTCTAGACCCAGAGAACCGCCTGTTGCTCTCATGGACTCCCCATTCTGACCCCTGTAGTAGTGTCTCTTTTGAGGGTGTGGCTTGCAATGAACAAGGCCTCGTTACCAATATTTCACTGCAAGGAAAGGGTCTATATGGAAGAGTACCTGAAGCTTTGGCTGCTCTCAAGAGCTTGACGGGTCTCTTCCTTCACTTCAATGCCCTCACTGGGATATTACCAAAGGAAATTTCCACTTTGACTGAGCTAAGTAATTTGTATCTCAATGTCAATAACCTCTCTGGTGACATCCCTCGCGAGATTGGCAATATGTCAAATCTTCAAGTTTTGCAGCTTTGCTATAACAAGTTTAGTGGGAGTATACCGACTGACCTGGGAAGGTTGAGGAAGCTCAGTGTTCTTGCACTGCAATATAATCAATTAAATAGCGCTATTCCTGCTAGTTTGGGTGAAGTGGGGACATTGGCACGATTGGATCTGAGCTTCAATAACCTTTTCGGTCCTATTCCGGTCACATTGGCTAATGCACCTAATCTCCAAACTCTGAATATTCGTAACAATTCTCTCTCTGGCCGTGTACCTACAGCTCTGATAAGACTCAGAGGTGGGTTTCAGTACATGAACAATCCGGGTTTATGTGGGACTGGATTCGCTGATTTAGGTTCTTGCAAAGGAGTAAGCACTTCAGAACCGGTTAGACCCGAACCGTATGAACCTGGTGATATTTCTACAAAAGATCTTCCTGCATCAATGGAACCACAGCGTGAAAGCTGCGGCGGTGGTCATTGTAAAAGGACATCGAAATCTTCAAAAATTGGTCTGGTTTTTACCGTCATTGGACTCGTTTTTGCTTCAACTGTTGCTGGGCTGCTTTTGCTATTCTGGCGACGTAGTCAGATTCAGAAAATTGGAAGTTCTGATAACCGGCTTAAGCAAGTGTGTAAGAAAAGTGCGTTTCCTCTTATCAGTTTGGAGTATTCTGACGGTTGGGACCCATTAGACAAAGGTCGATGTGGGTATTCCCAGGAATTTCTTGAGAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTCAAATCTTCTCAGAGGTAAATTTATTGGGGAAGAGTGATTCTTCAGCTGTGTACAGGGGGGTTTTGAGAGATGGTTCTGCTGTGACTATAAAATGCATCGCCAAAACAAGTTGCAAATCAGATGAAGGTGAGTTCTTGAAAGGTTTGAAGATATTGACCTCGTTAAGGCATGAAAATCTAGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGCCGCGGGGAATGTTTTCTGATCTATGACTCTCTCTCTAATGGGAGTCTGTTGCAGTATCTTGATGTTAAGAGAAACAGTGGTAGGGTACTTGATTGGTCGACCAGAGTGTTCATCATTCGTGGTATTGCCAAAGGTATCGATTATCTGCATAGGAAAAAAGGAAGCAAACATGGGATCGTTCACCAAAATATATCAGCTGAAAACGTACTTCTGGATGCTGGGTACAAGGCTTTACTTGCAGATTCGGGATTGCACAAGCTCCTTGAAGATGATGTTGTTTTTTCCGCCCTCAAAGCTAGCGCTGCCATGGGATATCTGCCTCCAGAGTACACCAAAACTGGTCGTTTGACTGAAAAGAGTGATGTGTATGCCTTTGGAGTGATTGTTTTCCAGCTTCTCACCGGAAAACGTGACATCACCCAGTTAAATTGCCAAAGTGGCATTTTGAAAGATATAGTTGATGAGAATCTTGAAGGGATGTTCTCAGAATCAGAGGCCACCAAGCTGAGAAGAGTTGCTGTGCTTTGCACTCACGAGTCCCCACATCTTCGACCATCTATGGATACCCTAATGCTAGAACTGGATGATAATGTGTAG 2109 0.4419 MFHLLQFTCVLFLLLPHPSSAKTSQHNCYTKDSTSLELIMCMILLKLLLFLTWISSPSLSTSMTQLDTLLAIRDSLDPENRLLLSWTPHSDPCSSVSFEGVACNEQGLVTNISLQGKGLYGRVPEALAALKSLTGLFLHFNALTGILPKEISTLTELSNLYLNVNNLSGDIPREIGNMSNLQVLQLCYNKFSGSIPTDLGRLRKLSVLALQYNQLNSAIPASLGEVGTLARLDLSFNNLFGPIPVTLANAPNLQTLNIRNNSLSGRVPTALIRLRGGFQYMNNPGLCGTGFADLGSCKGVSTSEPVRPEPYEPGDISTKDLPASMEPQRESCGGGHCKRTSKSSKIGLVFTVIGLVFASTVAGLLLLFWRRSQIQKIGSSDNRLKQVCKKSAFPLISLEYSDGWDPLDKGRCGYSQEFLESFMFNLEEVERATQIFSEVNLLGKSDSSAVYRGVLRDGSAVTIKCIAKTSCKSDEGEFLKGLKILTSLRHENLVRLRGFCCSKGRGECFLIYDSLSNGSLLQYLDVKRNSGRVLDWSTRVFIIRGIAKGIDYLHRKKGSKHGIVHQNISAENVLLDAGYKALLADSGLHKLLEDDVVFSALKASAAMGYLPPEYTKTGRLTEKSDVYAFGVIVFQLLTGKRDITQLNCQSGILKDIVDENLEGMFSESEATKLRRVAVLCTHESPHLRPSMDTLMLELDDNV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6469g00001 702 Gene3D Transferase(Phosphotransferase) domain 1 515 701 - -
Vium6469g00001 702 ProSiteProfiles Protein kinase domain profile. 436 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6469g00001 702 Gene3D Phosphorylase Kinase; domain 1 414 513 - -
Vium6469g00001 702 Pfam Protein tyrosine and serine/threonine kinase 440 697 IPR001245 GO:0004672|GO:0006468
Vium6469g00001 702 Gene3D Ribonuclease Inhibitor 64 177 IPR032675 -
Vium6469g00001 702 SUPERFAMILY Protein kinase-like (PK-like) 417 695 IPR011009 -
Vium6469g00001 702 CDD STKc_IRAK 442 699 - -
Vium6469g00001 702 MobiDBLite consensus disorder prediction 302 336 - -
Vium6469g00001 702 FunFam Protein NSP-INTERACTING KINASE 2 176 298 - -
Vium6469g00001 702 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 344 700 - -
Vium6469g00001 702 SUPERFAMILY L domain-like 62 274 - -
Vium6469g00001 702 Gene3D Ribonuclease Inhibitor 181 297 IPR032675 -
Vium6469g00001 702 FunFam Leucine-rich repeat receptor-like kinase 64 175 - -
Vium6469g00001 702 Pfam Leucine rich repeat N-terminal domain 65 104 IPR013210 -
Vium6469g00001 702 FunFam Protein NSP-INTERACTING KINASE 2 408 514 - -
Vium6469g00001 702 Pfam Leucine Rich Repeat 252 270 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6469g00001 Vium-Chr6469 10742 13422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6469g00001 38 549 Miscellaneous Gene Families AT4G22730 49.060 1.00e-164 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vium6469g00001 PK_Tyr_Ser-Thr 7.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6469g00001 - - vun:114183221 1202.96