Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6461g00005 ATGGCGGAGTCCGATAACGATTCCGGAGGTCAAGCCGGAAACACGAGTGGAGGCAATGAATTCTCGGGGTGCAGAGAGCAAGACAGGTTCCTTCCGATAGCAAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAAGAGGCGAAGGAAACCGTGCAAGAGTGTGTGTCGGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGCCAGAAGGAGAAGAGAAAAACTATCAACGGTGATGACCTACTGTGGGCCATGACCACACTGGGGTTTGAGGAGTATGTGGAGCCTCTCAAGATTTACCTGCACAAGTATCGGGAGATGGAGGGGGAGAAAACTGCTATGATGGGAAGGCCACAGGGTGGTGGTGGTGGTGGAGGAGGTAGTGGTGGCGGTGATCAGAGGGATGAGGCTTATATCCATGGCCATGCTCATGGAGGTATGGTGCCAAACTCTATGATGGCGATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGTGCTGGATCAGCATCTTCTGCAAGAACTAGATAG 561 0.5241 MAESDNDSGGQAGNTSGGNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPQGGGGGGGGSGGGDQRDEAYIHGHAHGGMVPNSMMAMMGHQGHVYGSGSAGSASSARTR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6461g00005 186 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium6461g00005 186 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vium6461g00005 186 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vium6461g00005 186 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vium6461g00005 186 SUPERFAMILY Histone-fold 27 131 IPR009072 GO:0046982
Vium6461g00005 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium6461g00005 186 MobiDBLite consensus disorder prediction 123 146 - -
Vium6461g00005 186 MobiDBLite consensus disorder prediction 1 22 - -
Vium6461g00005 186 Gene3D Histone, subunit A 19 137 IPR009072 GO:0046982
Vium6461g00005 186 FunFam Nuclear transcription factor Y subunit B-3 19 140 - -
Vium6461g00005 186 MobiDBLite consensus disorder prediction 1 24 - -
Vium6461g00005 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6461g00005 Vium-Chr6461 13852 14705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6461g00005 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.333 6.92e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium6461g00005 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6461g00005 K08065 - gmx:100305641 263.462