Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6461g00003 ATGAGAGAGAAAGAGACTGAGCCCACAACTTGCTCGGCTTTGGATGCGGAGGATGAAGAGGAGAATGATGACAATTCATCAGCAAGCCCTGAAGGAAATGGCCCTAGAAAGAGGAGAAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAGAAGCAGGAACAGATGCACAAACAGTTGGTGGAAATCATAGAAAAGAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCTGAAGAAAAGTCTCGCAGTTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCCCCAAGCAGTAGAAGCATGCAGCAAAAGAGAAGAGGGTGAAGTTGAAGTGAATGCTCATAAAGAATTTAATAGTGATCATAGTAAGAGTAGATGGCCAGATGTTGAAGTGCAATCACTTATCACAGTGAGAACTTCATTGGAGCACAAGTTCCGTTTCATGGGATCGAAAGGGTCAATTTGGGAGGAGATATCTGAAGCAATGTATGCATTGGGCTATAATCGGTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAATACTATAAAAGGACAATAGGGAGTGGCAAGAAGAGGCGTCAAAATAGTAAAAGCTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAACAAAAGGAGTAG 804 0.4254 MREKETEPTTCSALDAEDEEENDDNSSASPEGNGPRKRRRKTVRKLEGFVKNLVTKVMEKQEQMHKQLVEIIEKKERERIKREEAWKNEEMERIRKEEEARAEEKSRSLALISFIQNLLGHEIQIPQAVEACSKREEGEVEVNAHKEFNSDHSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEQKE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6461g00003 267 Pfam Myb/SANT-like DNA-binding domain 155 240 IPR044822 -
Vium6461g00003 267 MobiDBLite consensus disorder prediction 1 42 - -
Vium6461g00003 267 Coils Coil 58 108 - -
Vium6461g00003 267 PANTHER FI21293P1 17 255 - -
Vium6461g00003 267 MobiDBLite consensus disorder prediction 12 26 - -
Vium6461g00003 267 FunFam Trihelix transcription factor GT-2 157 218 - -
Vium6461g00003 267 ProSiteProfiles Myb-like domain profile. 149 213 IPR001005 -
Vium6461g00003 267 CDD GT1 155 219 - -
Vium6461g00003 267 Gene3D - 157 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6461g00003 Vium-Chr6461 2140 3824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6461g00003 37 245 Trihelix Transcription Factor Family AT5G47660 44.643 8.83e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium6461g00003 Myb_DNA-bind_4 6.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6461g00003 - - gmx:100820302 376.711