Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6461g00002 ATGAGAGAGAAAGAGACTGAGCCCACAACTTGGTACTATTATACATCATTCTTTTCTGATTCGAGAATGCTTTGGTTTGTAGCAGTGTGCTTTTGGTGGATGAAAAGAAATGCATTCTCGGCTTTGGATGCGGAGGATGAAGAGGAGAATGATGACAATTCATCAGCAAGCCCTGAAGGAAATGGCCCTAGAAAGAGGAGAAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAGAAGCAGGAACAGATGCACAAACAGTTGGTGGAAATCATAGAAAAGAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCTGAAGAAAAGTCTCGCAGTTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCCCCAAGCAGTAGAAGCATGCAGCAAAAGAGAAGAGGGTGAAGTTGAAGTGAATGCTCATAAAGAATTTAATAGTGATCATAGTAAGAGTAGATGGCCAGATGTTGAAGTGCAATCACTTATCACAGTGAGAACTTCATTGGAGCACAAGTTCCGTTTCATGGGATCGAAAGGGTCAATTTGGGAGGAGATATCTGAAGCAATGTATGCATTGGGCTATAATCGGTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAATACTATAAAAGGACAATAGGGAGTGGCAAGAAGAGGCGTCAAAATAGTAAAAGCTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAACAAAAGGAGTAG 888 0.4178 MREKETEPTTWYYYTSFFSDSRMLWFVAVCFWWMKRNAFSALDAEDEEENDDNSSASPEGNGPRKRRRKTVRKLEGFVKNLVTKVMEKQEQMHKQLVEIIEKKERERIKREEAWKNEEMERIRKEEEARAEEKSRSLALISFIQNLLGHEIQIPQAVEACSKREEGEVEVNAHKEFNSDHSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEQKE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6461g00002 295 Coils Coil 86 136 - -
Vium6461g00002 295 Gene3D - 185 246 - -
Vium6461g00002 295 ProSiteProfiles Myb-like domain profile. 177 241 IPR001005 -
Vium6461g00002 295 Pfam Myb/SANT-like DNA-binding domain 183 268 IPR044822 -
Vium6461g00002 295 FunFam Trihelix transcription factor GT-2 185 246 - -
Vium6461g00002 295 PANTHER FI21293P1 45 283 - -
Vium6461g00002 295 CDD GT1 183 247 - -
Vium6461g00002 295 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6461g00002 Vium-Chr6461 2140 3826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6461g00002 65 273 Trihelix Transcription Factor Family AT5G47660 44.643 3.63e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium6461g00002 Myb_DNA-bind_4 7.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6461g00002 - - gmx:100820302 376.711