Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6461g00001 ATGGACCTCTTCGCCGCCGATCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCCGATTCCGGCGACCTTCTATTCCCTGCCAACCTCCTCTCCCACCGCCACAACCCCCAGAAGCTCTGCCTCATCCGGTCCCTTCCCTCCGCTCTCAATGCCCACCCTCGTCCGCCCGATCCGATTGCCTCCGGGTCGGGTCACACCCCGAGCCAAGAATCTGACTCGGCTTTGGATGCGGAGGATGAAGAGGAGAATGATGACAATTCATCAGCAAGCCCTGAAGGAAATGGCCCTAGAAAGAGGAGAAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAGAAGCAGGAACAGATGCACAAACAGTTGGTGGAAATCATAGAAAAGAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCTGAAGAAAAGTCTCGCAGTTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCCCCAAGCAGTAGAAGCATGCAGCAAAAGAGAAGAGGGTGAAGTTGAAGTGAATGCTCATAAAGAATTTAATAGTGATCATAGTAAGAGTAGATGGCCAGATGTTGAAGTGCAATCACTTATCACAGTGAGAACTTCATTGGAGCACAAGTTCCGTTTCATGGGATCGAAAGGGTCAATTTGGGAGGAGATATCTGAAGCAATGTATGCATTGGGCTATAATCGGTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAATACTATAAAAGGACAATAGGGAGTGGCAAGAAGAGGCGTCAAAATAGTAAAAGCTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAACAAAAGGAGTAG 990 0.4717 MDLFAADHFPVPDHVAPFPDSGDLLFPANLLSHRHNPQKLCLIRSLPSALNAHPRPPDPIASGSGHTPSQESDSALDAEDEEENDDNSSASPEGNGPRKRRRKTVRKLEGFVKNLVTKVMEKQEQMHKQLVEIIEKKERERIKREEAWKNEEMERIRKEEEARAEEKSRSLALISFIQNLLGHEIQIPQAVEACSKREEGEVEVNAHKEFNSDHSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEQKE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6461g00001 329 Coils Coil 120 170 - -
Vium6461g00001 329 Pfam Myb/SANT-like DNA-binding domain 217 302 IPR044822 -
Vium6461g00001 329 Gene3D - 219 280 - -
Vium6461g00001 329 FunFam Trihelix transcription factor GT-2 219 280 - -
Vium6461g00001 329 CDD GT1 217 281 - -
Vium6461g00001 329 PANTHER FI21293P1 60 317 - -
Vium6461g00001 329 MobiDBLite consensus disorder prediction 51 105 - -
Vium6461g00001 329 ProSiteProfiles Myb-like domain profile. 211 275 IPR001005 -
Vium6461g00001 329 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6461g00001 Vium-Chr6461 2140 4300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6461g00001 99 307 Trihelix Transcription Factor Family AT5G47660 44.643 3.59e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium6461g00001 Myb_DNA-bind_4 9.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6461g00001 - - gmx:100815105 474.937