Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6458g00001 ATGGCCACCCCAAACGACGCCGCTTCGCCGACCAAGAAGCCTCAACCCATCCCCTGGACCCACCAAGAAACTGTCCACCTCATCCGCGCCTACCAGGAGAAGTGGTACGCGCTCAAGCGCGGCCCACTCCGCCACAACCAGTGGGAGGAGGTCGCCGTGATCGTAGCCGCCCGCTGCGGCTACGACCTCGCGTACCCCGCCAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCCGAAAAGAAACACGTCGCCGCCACGCTCCGTCCCGCCGCCTGGCAGTACAACGCTCTCATGGAGGACCTCGAATGCGGCCCCCTCCCCATCTCCGCCCTCGCCCCGTTCCAAAACGACACCGATTCAGATCCCGACGACGATGGCACTTATCGGAACGGCAATGATGGCGATGAGAGCTTTGTGAAGTCGAAGAGTATTAACTGTATTCTCGGCGAGAGGCCCGTGAGAATGAAAAGCGGTGAAAGAGGGTTTTTGAGGGAGCGTGCGGAAGAAGAACGAGACGAAGACGACGATGACGATCGCGACGACTATGTTTTGGCGTTGCCGGCGGAGATTAGGGCTTTCGCTGAGAGGTTTATTGGAATGGAGAGTTTGAAGATGGAAATGATGAAGGAAACTGAAAGGTGTAGGTTGGAGATGGAGAAGAAGCGGATCCAGATGATTGTGGATTCACAGCGGAGGATCGTTGATTCCATTGGGAGGGCGTTTGGGTCTAACAAGAGGGTCAAGATTACTCAACAAATCTGA 786 0.5751 MATPNDAASPTKKPQPIPWTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVIVAARCGYDLAYPAKSALQCRHKMEKLRQRHRAEKKHVAATLRPAAWQYNALMEDLECGPLPISALAPFQNDTDSDPDDDGTYRNGNDGDESFVKSKSINCILGERPVRMKSGERGFLRERAEEERDEDDDDDRDDYVLALPAEIRAFAERFIGMESLKMEMMKETERCRLEMEKKRIQMIVDSQRRIVDSIGRAFGSNKRVKITQQI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6458g00001 261 MobiDBLite consensus disorder prediction 168 188 - -
Vium6458g00001 261 Gene3D - 19 86 - -
Vium6458g00001 261 Pfam Myb/SANT-like DNA-binding domain 18 108 IPR044822 -
Vium6458g00001 261 ProSiteProfiles Myb-like domain profile. 18 81 IPR001005 -
Vium6458g00001 261 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 13 245 IPR044823 -
Vium6458g00001 261 FunFam Trihelix transcription factor ASIL2 19 86 - -
Vium6458g00001 261 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6458g00001 Vium-Chr6458 10316 13611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6458g00001 19 102 Trihelix Transcription Factor Family AT3G14180 29.762 1.70e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium6458g00001 Myb_DNA-bind_4 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6458g00001 - - gmx:100810821 388.267