Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6457g00002 ATGTCTCTCTGTGCTTCATTCTCCACCACAACTTCACGCCTCACTTCCCTTCCTTCTTCACTCTCTTCAAGTTCTCCGCTTTCTCTCAGATTTTCCTTCACTTTCCGGGAAAACAGAATCCCAGTTAAATCTCTGAAGGACCCATTTGCAGCAAGATCTGGAAGAGTATTGGTAAAGGCTCAGGCTACTGCTCCTGCTTCTTCTGAGGCTGTGAAACTCACACCTGTGCCTTCTGAGATGAAGGCATGGGTGTATGGGGAATATGGGGGTGTGGATGTTTTGAAGCTGGACTCCAATGTTGCTGTGCCTGATGTGAAAGAGGATCAGGTCCTTGTCAAAGTTGCTGCTGCTGCTCTTAATCCTGTTGATGGCAAGAGAAGGCAGGGAAAGTTTAAGGCCACCGATTCTCCTCTTCCGACTGTTCCGGGCTATGATGTTGCGGGAGTGGTGGTGAAGGTTGGTAGCGAAGTGAAGGACTTTAAAGTGGGTGATGAAGTGTATGGAAATGTAAATGAGAAAGCTTTAGAAGGGCCAAAGCAATTCGGGTCTTTGGCAGAGTACACCGCTGTTGAAGAGAAACTATTGGCAGCAAAACCTAAGAACATTGACTTTGCTCAGGCTGCTGCTCTTCCTCTAGCAATTGAAACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTAAATGGTTCTGGAGGAGTTGGAAGCCTAGTCATTCAGCTAGCCAAGCAAGTCTTTGGAGCTTCGAGAGTGGCTGCCACTTCAAGCACTAGAAATTTGGACCTATTGAAAAGCTTGGGAGCTGATTTGGCTATTGACTATACAAAAGAAAACTTTGAAGATTTGTCAGAAAAATTTGATGTGGTCTTTGATGCCATTGGGCAATGTGAGAGGGCAGTGAAGGCTGTGAAAGAAGGTGGCAGTGTGGTGGCACTGACAGGAGGTGTTACTCCACCTGGTTTCAGATTTGTGGTAACTTCGAATGGAGGTGTTCTTAGGAAACTAAACCCTTACTTAGAAAGTGGAAAGGTGAAGGCAATTGTAGACCCCAAAGGTCCATTCTCCTTTCCTCAGCTTGCTGAAGCTTTCTCTTATCTAGAAACGAATCGAGCCACTGGAAAGGTTGTTATACACCCCATCCCCTGA 1167 0.4593 MSLCASFSTTTSRLTSLPSSLSSSSPLSLRFSFTFRENRIPVKSLKDPFAARSGRVLVKAQATAPASSEAVKLTPVPSEMKAWVYGEYGGVDVLKLDSNVAVPDVKEDQVLVKVAAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGNVNEKALEGPKQFGSLAEYTAVEEKLLAAKPKNIDFAQAAALPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLDLLKSLGADLAIDYTKENFEDLSEKFDVVFDAIGQCERAVKAVKEGGSVVALTGGVTPPGFRFVVTSNGGVLRKLNPYLESGKVKAIVDPKGPFSFPQLAEAFSYLETNRATGKVVIHPIP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6457g00002 388 Gene3D - 87 384 - -
Vium6457g00002 388 Gene3D - 221 335 - -
Vium6457g00002 388 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 71 388 IPR044626 GO:0016628
Vium6457g00002 388 SMART PKS_ER_names_mod 89 384 IPR020843 GO:0016491
Vium6457g00002 388 Pfam Alcohol dehydrogenase GroES-like domain 108 171 IPR013154 -
Vium6457g00002 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 321 IPR036291 -
Vium6457g00002 388 CDD MDR_like_2 80 384 - -
Vium6457g00002 388 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 229 250 IPR002364 GO:0008270|GO:0016491
Vium6457g00002 388 SUPERFAMILY GroES-like 77 234 IPR011032 -
Vium6457g00002 388 Pfam Zinc-binding dehydrogenase 273 384 - -
Vium6457g00002 388 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6457g00002 Vium-Chr6457 57449 59140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6457g00002 135 298 Monolignol Biosynthesis Gene Families AT1G72680 29.016 3.59e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6457g00002 K18980 - gmx:100780585 607.446