Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6454g00007 ATGTCAAACATCACGAGTTGTGATAGTGGGAGCTTCTCTACAGAAAATACCAGAGAAGATGCAGCAGTTAAGCAGCAACCCGAGATGCTCGCTCAGTTCCACAGTCCACATTCTCTTACTTCAACCACAACAACAAATAACAGCAATGCTTCCAACACAAATTCTCAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCGAGTGCTGAAGTAATAGCTTTATCACCAAACACACTAATGGCAACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACGGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAGCCTTCGTGTGTCCACCACAATCCTGCAAGAGCACTGGGTGACCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTAGCTGAAGAGAACAACAAAGCCAACGAAGGACAATTACCAAAGATAGGTCCAAACTTGCAATCTCAACAGATTCCAAACCTTGTTTCCTCGTTACCAATCAACACCAACGTTGTTCCCAACCCACAACAAATCGGTGGCACCTCGGAGTTCAACCATGCTGAAAACAAGCACCCACTGTCACTCCCACACGAGCTGATGCCAATGCCTGCACCAAAACCCTTCAACTCCAACACTACCATGGCAGGAACAGTGTTCTCCAGAAGCCTCTCATCAACCTCTTCACCGTCTCTCCAACTGAGTTCAAACATATTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCGCAACACATGTCAGCCACCGCACTGCTGCAAAAAGCTGCCCAAATGGGAGCAACGGTGACGGATAAAAATTTTACCACAAACATGGCACCGCCGTCGTTTGGGGTGCTGCAACAGCATCCGAATGGACAATCCTTCATGAACCAGTACATGCACAGTGGCCAACAGGATCCCAACGTTAGCATCTCCGCTCAGTATAACGGTTTCGGCGCAAATGGGATGAGTGGAGGGAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAACAGAAGCAGTAATGGAGGTGCAACAAATGGAGGTTCAAGTGCTGCTATTAACGTCGGTGGAAGTAAAGGAAGTGAGGATGTGATGACTTTGGACTTTTTGGGAATAGGAGGTGGCGGTGGCGGCGGCGGCGGTGGCGGTGCGCATGGAAACTTTTATGGTGGTGGTCAGCAAGCAGAAAACGGTGCGCCGGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1572 0.4765 MSNITSCDSGSFSTENTREDAAVKQQPEMLAQFHSPHSLTSTTTTNNSNASNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQSQQIPNLVSSLPINTNVVPNPQQIGGTSEFNHAENKHPLSLPHELMPMPAPKPFNSNTTMAGTVFSRSLSSTSSPSLQLSSNIFEENGLHLAAGSQHMSATALLQKAAQMGATVTDKNFTTNMAPPSFGVLQQHPNGQSFMNQYMHSGQQDPNVSISAQYNGFGANGMSGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSNGGATNGGSSAAINVGGSKGSEDVMTLDFLGIGGGGGGGGGGGAHGNFYGGGQQAENGAPDEVWRNWSSKNAGFESFSATSSI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6454g00007 523 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Vium6454g00007 523 MobiDBLite consensus disorder prediction 1 20 - -
Vium6454g00007 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 489 IPR031140 -
Vium6454g00007 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Vium6454g00007 523 MobiDBLite consensus disorder prediction 31 60 - -
Vium6454g00007 523 MobiDBLite consensus disorder prediction 1 76 - -
Vium6454g00007 523 Gene3D Classic Zinc Finger 70 137 - -
Vium6454g00007 523 FunFam protein indeterminate-domain 12-like 70 138 - -
Vium6454g00007 523 Gene3D Classic Zinc Finger 146 225 - -
Vium6454g00007 523 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vium6454g00007 523 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Vium6454g00007 523 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Vium6454g00007 523 SMART c2h2final6 167 187 IPR013087 -
Vium6454g00007 523 SMART c2h2final6 132 162 IPR013087 -
Vium6454g00007 523 SMART c2h2final6 91 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6454g00007 Vium-Chr6454 33690 37484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6454g00007 48 350 IDZ Gene Family AT3G50700 56.881 1.88e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6454g00007 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6454g00007 - - gmx:100785295 846.654