Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6454g00005 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTACGGTGCAAGAGGTCCGACGGAAAGCAGTGGCGGTGCACGGCCATGTCGATGCCTGACAAGACGGTGTGCGAGAAGCACTACATCCAGGCTAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCTGCTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAATCAGTTTCGTTACACGCCCGAGCGTGACGCTCGAAGAGCCTCCTCTGCGAGACATGCTCATGACGAGGTGGATGTGGATGTGGATGCGGATGCTGATGCTGATGCTGATGCAGATGCAGATGCAGATGTGGATGTGGATGTAGATGTGGATGCGGATGCTGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTATGATTCCCCGCCGGACTCCTCGCGCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACCACTGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACAGAGATAGAGTTACGTGGTGCTTAAAATGTGACCGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGATGTACAGAGGATATGTCCTGCTTGCCGCGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGTATACGCGAGACACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCTTCGGTGCTTCCGGTGGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTAGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATAACTGATTATCATCGACGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCTCAGACAGAGCTAGCTAAAACTTGTGATCAAAATATATTAAGTAAATTTCCCCATTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTGATGCCGATGGTCCACCAGAAACTGGGCTGAATGATCTCAGACTGTGCCAGTGTTCTCATAGAGAAGCCAGTGATGATAATTATCTTTTTTGTCCAGCATCTGACGATATCAAAACTGATGGGATTGGAAAATTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGAAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAACGGTCATATGGAGGGGGGTTCAAGAGACAACAGATGAAAAAGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATCGAGCTTGCTCAGTTCATGAAAGGATACTTCGAAGGGCGTGTTCATGAAAATGGTTGGCCACAGTTATTAAAATTGAAGGATTGGCCTTCACCTAGCGCATCTGAAGAATTTCTCTTGTATCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATCCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGAATTAGCGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTAAAGGATTGGCAGAGAACTAAAATTGAAATCATGCAAAAGGATAAAGCTGATGAGGAATCTGAGGCGAAAGAGTCACATGGAGATCCTCAAATATTTTCAAGCGGGAGTTCACTTGATTCATCACTTGGTACAAAAAGTAGTGGACTTGACATGGATTCAAACCAGAATAAGTCAATTATGGATCAAGAATTTGAAATTTATTCTAGTGCTGAAGGTGATATGGTCAATTGTAAGGTCCTGTCTACACAAAATAGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATTCATTGGAAGGAATTGGGGAAGTCAGATGATGTGGGAAATGAATTTGTTGCATGGCCTCTATATGGTGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGCGATGCTGTACGATTGACAGAGGAAATTCGCTGTCTACCGATTGAACATGAATCAAAAGTTCAAGTATTGGAGGTGGGGAAGATATCTCTCTATGCAGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAAAAACTTGGCGCCGAGATTGGATATGGAGACCCTAATTTGACAGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2853 0.4392 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRASSARHAHDEVDVDVDADADADADADADADVDVDVDVDADADADVALYEEDNWVSYDSPPDSSRKRSRRSLDANATTEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLKCDRRGYCDSCISAWYSDISLDDVQRICPACRGICNCKTCLRSDNSIKVRIRETPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADHNKEPQTELAKTCDQNILSKFPHWRSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISDADGPPETGLNDLRLCQCSHREASDDNYLFCPASDDIKTDGIGKFRKHWKTGEPIIVKKVFDGSSISSWDPTVIWRGVQETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGRVHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQKDKADEESEAKESHGDPQIFSSGSSLDSSLGTKSSGLDMDSNQNKSIMDQEFEIYSSAEGDMVNCKVLSTQNRDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKELGKSDDVGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPIEHESKVQVLEVGKISLYAASSAIKEVQKLVLDQKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6454g00005 950 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 105 131 - -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 1 20 - -
Vium6454g00005 950 SUPERFAMILY Clavaminate synthase-like 493 889 - -
Vium6454g00005 950 SMART cupin_9 591 880 IPR003347 -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 699 726 - -
Vium6454g00005 950 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 206 272 IPR018866 -
Vium6454g00005 950 Pfam JmjC domain, hydroxylase 815 859 IPR003347 -
Vium6454g00005 950 ProSiteProfiles JmjC domain profile. 584 880 IPR003347 -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 54 75 - -
Vium6454g00005 950 Pfam WRC 17 57 IPR014977 -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 189 210 - -
Vium6454g00005 950 Coils Coil 56 76 - -
Vium6454g00005 950 FunFam lysine-specific demethylase JMJ25 isoform X1 473 714 - -
Vium6454g00005 950 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 915 IPR045109 GO:0032454|GO:0033169
Vium6454g00005 950 Gene3D Cupin 472 889 - -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 686 726 - -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 105 129 - -
Vium6454g00005 950 ProSiteProfiles Zinc finger RING-type profile. 211 258 IPR001841 -
Vium6454g00005 950 MobiDBLite consensus disorder prediction 167 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6454g00005 Vium-Chr6454 19202 25851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6454g00005 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.31e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium6454g00005 JmjC 1.9e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6454g00005 K15601 - gmx:100792166 1640.94