Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6454g00003 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTACGGTGCAAGAGGTCCGACGGAAAGCAGTGGCGGTGCACGGCCATGTCGATGCCTGACAAGACGGTGTGCGAGAAGCACTACATCCAGGCTAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCTGCTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAATCAGTTTCGTTACACGCCCGAGCGTGACGCTCGAAGAGCCTCCTCTGCGAGACATGCTCATGACGAGGTGGATGTGGATGTGGATGCGGATGCTGATGCTGATGCTGATGCAGATGCAGATGCAGATGTGGATGTGGATGTAGATGTGGATGCGGATGCTGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTATGATTCCCCGCCGGACTCCTCGCGCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACCACTCAGGAATATTCCGACGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACAGAGATAGAGTTACGTGGTGCTTAAAATGTGACCGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGATGTACAGAGGATATGTCCTGCTTGCCGCGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGTATACGCGAGACACCTGTTCTGGATAAGTTACAGTATCTCCATGTGTTGCTATCTTCGGTGCTTCCGGTGGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAACTAGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATAACTGATTATCATCGACGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCTCAGACAGAGCTAGCTAAAACTTGTGATCAAAATATATTAAGTAAATTTCCCCATTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTGATGCCGATGGTCCACCAGAAACTGGGCTGAATGATCTCAGACTGTGCCAGTGTTCTCATAGAGAAGCCAGTGATGATAATTATCTTTTTTGTCCAGCATCTGACGATATCAAAACTGATGGGATTGGAAAATTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGAAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAACGGTCATATGGAGGGGGGTTCAAGAGACAACAGATGAAAAAGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATCGAGCTTGCTCAGTTCATGAAAGGATACTTCGAAGGGCGTGTTCATGAAAATGGTTGGCCACAGTTATTAAAATTGAAGGATTGGCCTTCACCTAGCGCATCTGAAGAATTTCTCTTGTATCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATCCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGAATTAGCGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTCAATATTCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGTTAAAGGATTGGCAGAGAACTAAAATTGAAATCATGCAAAAGGATAAAGCTGATGAGGAATCTGAGGCGAAAGAGTCACATGGAGATCCTCAAATATTTTCAAGCGGGAGTTCACTTGATTCATCACTTGGTACAAAAAGTAGTGGACTTGACATGGATTCAAACCAGAATAAGTCAATTATGGATCAAGAATTTGAAATTTATTCTAGTGCTGAAGGTGATATGGTCAATTGTAAGGTCCTGTCTACACAAAATAGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATTCATTGGAAGGAATTGGGGAAGTCAGATGATGTGGGAAATGAATTTGTTGCATGGCCTCTATATGGTGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGCGATGCTGTACGATTGACAGAGGAAATTCGCTGTCTACCGATTGAACATGAATCAAAAGTTCAAGTATTGGAGGTGGGGAAGATATCTCTCTATGCAGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAAAAACTTGGCGCCGAGATTGGATATGGAGACCCTAATTTGACAGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2856 0.4394 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRASSARHAHDEVDVDVDADADADADADADADVDVDVDVDADADADVALYEEDNWVSYDSPPDSSRKRSRRSLDANATTQEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLKCDRRGYCDSCISAWYSDISLDDVQRICPACRGICNCKTCLRSDNSIKVRIRETPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADHNKEPQTELAKTCDQNILSKFPHWRSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISDADGPPETGLNDLRLCQCSHREASDDNYLFCPASDDIKTDGIGKFRKHWKTGEPIIVKKVFDGSSISSWDPTVIWRGVQETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGRVHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQKDKADEESEAKESHGDPQIFSSGSSLDSSLGTKSSGLDMDSNQNKSIMDQEFEIYSSAEGDMVNCKVLSTQNRDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKELGKSDDVGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPIEHESKVQVLEVGKISLYAASSAIKEVQKLVLDQKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6454g00003 951 ProSiteProfiles JmjC domain profile. 585 881 IPR003347 -
Vium6454g00003 951 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 105 131 - -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 1 20 - -
Vium6454g00003 951 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 207 273 IPR018866 -
Vium6454g00003 951 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 916 IPR045109 GO:0032454|GO:0033169
Vium6454g00003 951 SUPERFAMILY Clavaminate synthase-like 494 890 - -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 54 75 - -
Vium6454g00003 951 Pfam WRC 17 57 IPR014977 -
Vium6454g00003 951 Pfam JmjC domain, hydroxylase 816 860 IPR003347 -
Vium6454g00003 951 Coils Coil 56 76 - -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 700 727 - -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 189 211 - -
Vium6454g00003 951 Gene3D Cupin 473 890 - -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 105 129 - -
Vium6454g00003 951 FunFam lysine-specific demethylase JMJ25 isoform X1 474 715 - -
Vium6454g00003 951 SMART cupin_9 592 881 IPR003347 -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 167 213 - -
Vium6454g00003 951 MobiDBLite consensus disorder prediction 687 727 - -
Vium6454g00003 951 ProSiteProfiles Zinc finger RING-type profile. 212 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6454g00003 Vium-Chr6454 19202 25851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6454g00003 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.31e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium6454g00003 JmjC 1.9e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6454g00003 K15601 - gmx:100801287 1645.17