Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6454g00001 AAACGTTCACGAAGAGAACAGAGAAAAAGAAGAGAAGAAGAAGCAGATAACCAAGCTTCGAATAACGTCGGCTTGGACGCTCGCCCCTTCGGCCTAACAAAAGAACGAGATAGGAAGAGAACGTATCTTCTCTCCGTTGCTAAGAAACTGTTTACGTAGTGTGACGGAAAGAAGAAGCTAGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAACTGTGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGTTTTTTTGGGGGTGGTTGGAGTTATGCAGAGTTCAACTGAAAGTTGTGCAGCTGAATAGCAACATGCTTGCTAATGACTTGCGGGCAGCATTGGCCGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGCATCCATTAACGAATCCCTTGAAACTCTTGTTCTTGATGAGGCCGATCTTCTTCTATCCATATGGGTATTGAATGATTTAAAAGCTTTAACACCTCATGTTCCCAGAAGTTGCCAGTGTCCTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGAGATCATTCCTAAAAGTGTTCAGCAGTTTTGGATCTCATGTTCTACCAGTGACAAGTTACTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTCCTTATATTTACAAATACCATAGACATGAGTTTCAGATTGAAACTATTCTGGAAAAGGTATTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTTCATATTCTGGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAGGATGAAGTGTCTAAGGAAAGTAATGTTGTATCACGGAAGTCTAGAAAACGTGCTAAAGTAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAGTTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAATGTTGAGGGATATGTTCATCGAATTGGACGAACAGGAAGAGCATACAATTCTGGTACTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAGTAAGATCTTTTGTTGGAGATGACGAAAACAAAGGCACAAGTTCTGTTGCCGAGTTTCCCCTTCTCACCAAGAATGCCGTTGAATCTCTACGGTATAGAGCTGAGGATGTTGCCAAGAGTGTAACCAGAATTGCAGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAGAGACCTAGATCTACTGAAGCACGACAAAGTTTTGAGCAAGAATGCTCCACCTCCGCACCTGCGTGATGTGCCTGACTACCTATTAGACAAACAAACGAAAGAGGCAAGGGAAATGGTCAAACTTGCGAGGGATGCAATGGGAAATAATAATCGCCGCAAAGGATCCAAGAGAAAATTAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCCGCTCTGGCATCAAAAAGACCGCGCAAAGTTAGGAAGACTGGTGGAAGCGATGGCAACGATGGCAGTGATAGACATAAACGCAAAAAGAACAAGGGTTTATGA 1716 0.4231 KRSRREQRKRREEEADNQASNNVGLDARPFGLTKERDRKRTYLLSVAKKLFTXCDGKKKLAPNAFVLVPTRELCQQVYAEVLSLFFWGWLELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSGGILKAASINESLETLVLDEADLLLSIWVLNDLKALTPHVPRSCQCLXMSATSSADVDKLKKLILHNPFILTLPEVGNNKDEIIPKSVQQFWISCSTSDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFWKRYFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVSKESNVVSRKSRKRAKVKLDSEFGVVRGVDFKNVFTVINFEMPQNVEGYVHRIGRTGRAYNSGTSVSLVSPDEMDTLEEVRSFVGDDENKGTSSVAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKQTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPRKVRKTGGSDGNDGSDRHKRKKNKGL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6454g00001 572 Coils Coil 447 467 - -
Vium6454g00001 572 MobiDBLite consensus disorder prediction 549 566 - -
Vium6454g00001 572 Gene3D - 211 415 IPR027417 -
Vium6454g00001 572 Gene3D - 54 210 IPR027417 -
Vium6454g00001 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 205 IPR014001 -
Vium6454g00001 572 SMART ultradead3 31 225 IPR014001 -
Vium6454g00001 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 423 IPR001650 -
Vium6454g00001 572 CDD SF2_C_DEAD 222 386 - -
Vium6454g00001 572 MobiDBLite consensus disorder prediction 1 24 - -
Vium6454g00001 572 PANTHER RNA HELICASE 41 499 - -
Vium6454g00001 572 SMART helicmild6 262 377 IPR001650 -
Vium6454g00001 572 Pfam DEAD/DEAH box helicase 42 194 IPR011545 GO:0003676|GO:0005524
Vium6454g00001 572 MobiDBLite consensus disorder prediction 512 572 - -
Vium6454g00001 572 Pfam Helicase conserved C-terminal domain 233 377 IPR001650 -
Vium6454g00001 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 389 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6454g00001 Vium-Chr6454 7 7724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6454g00001 63 400 Eukaryotic Initiation Factors Gene Family AT1G72730 24.128 7.16e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6454g00001 K14810 - gmx:100800749 877.856