Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6444g00003 ATGGATGAACAATTAAATCCAGCAGAACTTGAGGAGGTTATCAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAACCTCCTGAAAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGAATACTATATTTTCTCGCTTTGGAACTGTATCATCGGCAGAAATCATCCGTGATCACAAAACTGGTGACAGTTTATGCTACGCTTTCATAGAATTTGAGGACATAAGGTCATGTCAGGAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAATTGTGGTCCCAATACAGGCGTAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGCTCTACAGATCATATTGCCAAGGACTGCACTGGAGATGCTACAATGAAACAACCACAAACAAAATACATTTTAAAGGATGATAATACCCAACGTGGTGGAGATAATTCGAGATATGAAATGGTTTTTGATGGAGATGATAACCCAGAAAGTCCAAGGCAAGATGTAAAACACCGAAAGCATGACAGGGATGACCCAGTTGAGAAAAAAGTTAGGGAAGAAAATTTTAAAGATCATAGAAGTAGTAGGGAACGGGATACGGTAAGAGATAGGTACGGTGATAGAAGCAGAGAGCATGGGGGAAATGGAGAAAACAAAGCACGATATGACAGAGGTGCAAGAGATTTGGATTCGAATGCTGACAAGAAAGAAAGAGATAGGCACAAGGGTAGACATGGAAATGATGATTACAGGTGGAAAGTTGATCATGAATCCAGAAAAGAAGAGGATGATGGCTACAAGCGTAAAGATGAGCGAGACTCTAGAAGAAGATATGAAGATGATAACTACAAGCGTAAAGATGAGCGAGGCCCTAGAAGAAGAGATGAAGATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATGACAGTGGTTATAGGAAGAGACCTGAAGACAGTGGAAAGCAAGATGTGAAGATTGATTCTGGTCGAAGAAAGAGAAGTCCAAGTGATGATTACAAAAATGGAAGGAAAGATGAAGATTACAAACATAGAAAGGAAGAACGAGGGAATAAAAGGCAAGATATTGAATCTGATGAGGATTACAAACGTAGAAGGGAGGATGGAGATTACAGACATAGAAGGGAGGAACGTGGACACAAAAGACAAGATGTTGAAGCTGATGATTATCCTCATAAGAGGCATCATGGTGACAGGAGATGA 1320 0.3985 MDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPENVLFVCKLNPVTEDEDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDIRSCQEAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATMKQPQTKYILKDDNTQRGGDNSRYEMVFDGDDNPESPRQDVKHRKHDRDDPVEKKVREENFKDHRSSRERDTVRDRYGDRSREHGGNGENKARYDRGARDLDSNADKKERDRHKGRHGNDDYRWKVDHESRKEEDDGYKRKDERDSRRRYEDDNYKRKDERGPRRRDEDDRRNTDSSHLERRNDSGYRKRPEDSGKQDVKIDSGRRKRSPSDDYKNGRKDEDYKHRKEERGNKRQDIESDEDYKRRREDGDYRHRREERGHKRQDVEADDYPHKRHHGDRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6444g00003 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Vium6444g00003 439 MobiDBLite consensus disorder prediction 171 439 - -
Vium6444g00003 439 ProSiteProfiles Zinc finger CCHC-type profile. 140 153 IPR001878 GO:0003676|GO:0008270
Vium6444g00003 439 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 352 IPR035542 -
Vium6444g00003 439 Gene3D - 6 122 IPR012677 -
Vium6444g00003 439 FunFam Peptidyl-prolyl cis-trans isomerase 1 122 - -
Vium6444g00003 439 CDD RRM_PPIL4 39 121 - -
Vium6444g00003 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Vium6444g00003 439 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vium6444g00003 439 MobiDBLite consensus disorder prediction 164 439 - -
Vium6444g00003 439 Gene3D - 123 177 - -
Vium6444g00003 439 Pfam Zinc knuckle 139 154 IPR001878 GO:0003676|GO:0008270
Vium6444g00003 439 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Vium6444g00003 439 SUPERFAMILY RNA-binding domain, RBD 28 138 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6444g00003 Vium-Chr6444 6904 13259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6444g00003 44 119 Eukaryotic Initiation Factors Gene Family AT4G34110 34.211 9.91e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6444g00003 K12735 - gmx:100776900 679.093