Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium643g00009 ATGGCTTTCCAAGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGCTGAGCGAGGGAAGAGATATGCAGCAGAGGCTCCCACCGACATGGCTCAACAGCGTCAACGCGGCGCAGCAGCGGCAGCAGAATTTCCTTGACGGCGCCGCCGAGAAAAGCGTGGATCGGAACCGGGGCGAGAGCAATTGCGAGTCGGAGGATTTGAGGGAATACAAAGCGGACATTCTTGGACACCCTCTCTACGATCAACTGTTATCGGCGCACGTGTCGTGCCTCAGGATTGCCACGCCCGTCGACCAGCTTCCCAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGGTGGAAAAGTACTCGGCACTCGCGAATAACGGCGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTCCTGTTGCTCTGTGCATTTAAAGAACAACTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTCTCTCCCGGAGAAGGTACGGGTGCAACAATGTCAGACGATGAAGATGATCAGGCAGAGAGCAACGGCAACCTTTACGAAGGGAGCTTCGACGGCGGCGAAAGCCTTGGGTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGATCCTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAATTGAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCATACCCCACTGAGGAAGACAAGGCTAGACTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAATAACCCTTCATCTTCGAGTAACACCAAAACCAAGCGCAAGAGCAGTGCAGGAGAAAGCAGTAATCAGAGCTTCATGTGA 1047 0.5177 MAFQDHLQHEIAFQRFTEEQELSEGRDMQQRLPPTWLNSVNAAQQRQQNFLDGAAEKSVDRNRGESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALANNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNGNLYEGSFDGGESLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNTKTKRKSSAGESSNQSFM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium643g00009 348 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Vium643g00009 348 ProSiteProfiles ELK domain profile. 239 259 IPR005539 GO:0003677
Vium643g00009 348 Pfam KNOX2 domain 132 181 IPR005541 GO:0003677|GO:0005634
Vium643g00009 348 CDD homeodomain 262 323 IPR001356 GO:0003677
Vium643g00009 348 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Vium643g00009 348 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Vium643g00009 348 SMART HOX_1 261 326 IPR001356 GO:0003677
Vium643g00009 348 SMART KNOX2_2 127 182 IPR005541 GO:0003677|GO:0005634
Vium643g00009 348 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 338 - -
Vium643g00009 348 MobiDBLite consensus disorder prediction 181 205 - -
Vium643g00009 348 Pfam ELK domain 239 260 IPR005539 GO:0003677
Vium643g00009 348 Gene3D - 260 321 - -
Vium643g00009 348 SMART ELK_2 239 260 IPR005539 GO:0003677
Vium643g00009 348 Pfam KNOX1 domain 76 117 IPR005540 GO:0003677|GO:0005634
Vium643g00009 348 SUPERFAMILY Homeodomain-like 261 325 IPR009057 -
Vium643g00009 348 MobiDBLite consensus disorder prediction 316 348 - -
Vium643g00009 348 FunFam homeobox protein knotted-1-like 3 isoform X1 260 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium643g00009 Vium-Chr643 45371 51268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium643g00009 76 343 Homeobox Transcription Factor Family AT5G11060 82.288 6.30e-164 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium643g00009 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium643g00009 - - gmx:100803673 644.81