Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium643g00007 ATGGCGTTTGATCAGAATTCGGTTCCATTGGATCTTCGTCCGTTGAATGTGGCCGCCGCGATAGCGGAGGAGCCGATGATTTCGCCGGCCGCACTCACGCCGCCGACTCCTAATTCTGTCGGCGAGCTTTTTTACCAGCCGGCGGCCTCCGCCGGCACAACGTGGTGCGTCCGCCCCATTGCGCATGCCAACGTGAGCCCTGCCGCGGCGTATGGGTTTAACTACGGCGCTTCCAGCTTTGGCAGTCGCGTCGTGGCCGGGAATGCTTTGAGTTTGGGGAAGCTTGTGGGGTGTAATGGATTGGACAAGGCCTGCAATGATGCGAGTGGTTTTAGTTATGGTGTTGGCGGGGTCCGGGGCGGCAGAGTGGTCTGTAGTGGAAGCGATCACGGTGGCGGGGATGAGGGTGGTGGCGGCGGTGATGAGTCGGTGTCCGGGAAGAAGGTGAAGTTTCTCTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGGGGCCAAACACGGATCATCAGTGTTAGGAAGGATGTGAGTTTCAATGATTTGGTACAGAAGATGGTTGACACTTATGGGCAGGCTGTGGTTATCAAGTATCAGCTTCCCGAGGAGGATCTTGATGCCTTGGTGTCCGTGTCATGTCACGATGATATTGAGAATATGATGGAAGAGTATGATAAGTTGGTTGATAGATCTTCTGACGGTTCTGCAAAACTAAGAGTTTTTCTGTTTTCTGTTTCGGAGACGGAAGTTTCTAGTGGGATGCAGTTGGGGGACTTTCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGGATTGGTACGACAGATGCGATTGGTTTTGGTGGTGGGATCAATAGGAAGGAGAGTGTTACAAGTGCTGCTTCAACCCAGAATTCGGATTTGAGCGGGGCTGAGACTTTTGAAAGTTCAATTACTGGTCAAGGGGATGCCACTGGGGTGCCCTTGTCATCACCTAAAGATTATGTGACAGCAGCTTCCTCCGACTCAAGTGCTAATATAGTGAGTTCAGAGGCCAGTACACCGGTTTCGATACCAATGCCTGTGGCTAGGGCTGGTCCAACCCCATCCCACAACCCTTATTTTCAGAATGAGGTTGAGTTAGAAAGGTCTGTCCCTGTTGTTTTGCCCCAGCAGCCATTTGGATTGCAGCAAGCTGGAATAGAAGTTCCATCCCCTGCACCTTATTATCAGACTTGTGTTGATCCTAGCCAGGAGGTTATGAACCATGCGGACTATGTGCAGGTTACTTCACAGATGAGGTTCACAAACCCTCAGCTTGTAGGAAAGACCGGGACTGTCTTGAGGCAACAGCAGTTTCATGATAATACTCCCGGCTTAGCATTGCATCATCAGGTCATCCCCGGGGTACAAATGACTGTGGCTCCACAATCTTCTCACGCTGGTGTGAGACCGAATGTTATTCAACCACAACCGTTGGTGCAATCACAGCAACATCTTTTGGATCAATACCATGATGAAAATACATCAGGGGTAAGGATTATCCAGCTTCCTGCTGAACCTAGCTACAACGCTTACCAGGTTTCAGCGAGTCAAGTATCACCTGTCATAGTTGGAGGCAATTAAAGCTGGGTTCAGGTTCCTTCACAAGAGCGCGTTGTTATCTCGGATGGAGTATCACCCCAACAACAGGTAACGAGTCATGAGAAATTCCGAAGAATCGAGGACTGTTCTATGTGTCAGACAACACTACCGCATGCACATTCTGATCCAGTAGTTCCGGATGAGCGTGGTAGTGGTGCAGGTCCTGTTCCTGATTCAACCCCAAGTCACTATAGTTTCCCAATGGAGGACAACATAAAAGCTCAAGCACCAAATATGATTATGCCAGTGGCGATGGCGCCGTTGAAGGAAGGCATTGCTGAACAAGGGGCTGGGATCAGACCCAGGGTCGTTGGCAAACTGGAACCTCCTGATGGAGTGCATCATACTGAGACCACTGGGCTTTCTCATAATATTGAGCCACAGCCGGAAGAATTTAATCATGCCGGGAACTCATTTTTCCAGGAAAAAATTGAATTGAAAGGTAGAAAACAATCTCCAAATGATGAGCTCATGGGAACAGCAGCACTGTCTTATCTAGATGATGTTGGACACCAACACATGGTACCAGTTGAAAACTGGGTTAAACAGGATGTGCTTATTAACAAACCTATGAATAATGATATGTCTATGGTCGATGGAAGATCTATGCGAACTTCAGAGTGTATGGTTCAAGGATCTCCAAATGAATATACTAATGAACGTACTGGGGTTGTTTCTAAATCAGATGAGATACATAATTGGATTAGACAAGACCATCTAAAACCAATTGATGGAAGGATGGACACCTTCAAGATACACAATTCTGATGCTTTTGTAAGTAATGACTACTCTTTTCTGCCAGCTGATAAACCCAGTGGGAATGATAATTTAGGTTACAGCACTCATAAATCTGTAGAGGGAGAGGTGATTCTGGATAACTTTGGCAGGTCAAAGTTGATAGCTGATGCGAATCAAAATAATATTGCAGCTGTGCTGCCTTGTTCTTCTTCATACAGGCAAAATTCCAGGTCAGGGGAACACAATGAGGCTACACAACCCCCTATTTGGGGCATTCCCGGCTCAAATGCTCAACCGAATATTGGAAACCCCCACACAGAAGATGCTGCACTATCTTCATCATCTCCATCTGTCAGATTTGGAGATGTGCAGGATACTCCGAACTCACTGTTCAGTAATCAGGATCCATGGAACATACAGCATGGTACCATCTTTCCACCTGCTAGACAAAGCAAAGCTGCATTGAAGAAAGAAACCTTTTCTTGCCAGGATCCCTTTGCTGAGGATACTGGTAGCTTTGGGGAACAAAGTTTAGAAGCACAGTTGGAAGATAGCCTCTATCAGTCTTTCAAACAAAATTTAACTTTCGAACATAGTCGGTCAGCCAAAGGTTCAGCAGAAGACCAACAACTTCAAGCTGTTGCGGAGAATGTAGCTGCCTCTGTTTTGCACTCGAGAAATCCTTCAAATTCTGACTTGCATTCCAGAGATGTTTCCTGCTGTGATAACATTGAGGATGGCAGTGTTCAAAATAATCTTATGGATGTAAAGTGTGGACATACAACTCAGGAGGTCTGGAGCAGGCAACTAGAAAAAACAAATTGTGGCATTCTAGCATCAGGTTTTGGAAAATTACAGGTTATAAAGAACTGTGATCTTGAAGAACAGACAGAACTTGGTTCTGGTACGTTTGGGACCGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGCATTACTGATAGATGTTTTGCTGGAAAGCCTTCAGAGCAAGAGCGCATGAGAAGTGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTGGTAGCTTTCTATGGTGTTGTGCTTGATGGCCCTGGGGGTTCTGTGGCAACAGTCACTGAATATATGGTTAATGGTTCCTTAAGAAATGCCTTGCAGAAGAGTGACAGGAATCTTGAAAAGCGCAAGCGACTTTTGATTGCAATGGACGTGGCCTTTGGCATGGAGTACCTACATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTTAATCTCCGAGATTCACACCGACCAATATGCAAGGTTGGAGACTTGGGTCTGTCCAAAGTAAAATGTCAGACACTGATCTCTGGTGGGGTGAGAGGAACTCTGCCGTGGATGGCTCCAGAACTGCTTAACGGAAGCAGCAGCCTTGTTTCAGAGAAGGTTGACGTATTTTCATTTGGCATCGTGATGTGGGAACTCTTGACCGGATTGGAGCCCTACGCTGACTTGCACTATGGTGCTATTATTGGTGGTATAGTGAGCAACACTTTACGCCCTCCTATTCCAGACCATTGTGATCCAGAATGGACATTGTTGATGGAGAGGTGTTGGTCATCAGAGCCATCAGAGAGACCAAACTTCACTGAGATTGCCAGTGAATTGCGATCTATAGCGGCCAAGATCTCTCCCAAAGCACAGAACTCTCCCAAAGGACAAAACCAACAGCTGCAACAATCTCCAGTGCAAACTCAACTCAACAAATGA 4155 0.4652 MAFDQNSVPLDLRPLNVAAAIAEEPMISPAALTPPTPNSVGELFYQPAASAGTTWCVRPIAHANVSPAAAYGFNYGASSFGSRVVAGNALSLGKLVGCNGLDKACNDASGFSYGVGGVRGGRVVCSGSDHGGGDEGGGGGDESVSGKKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRKDVSFNDLVQKMVDTYGQAVVIKYQLPEEDLDALVSVSCHDDIENMMEEYDKLVDRSSDGSAKLRVFLFSVSETEVSSGMQLGDFQDTGQKYFDAVNGIGTTDAIGFGGGINRKESVTSAASTQNSDLSGAETFESSITGQGDATGVPLSSPKDYVTAASSDSSANIVSSEASTPVSIPMPVARAGPTPSHNPYFQNEVELERSVPVVLPQQPFGLQQAGIEVPSPAPYYQTCVDPSQEVMNHADYVQVTSQMRFTNPQLVGKTGTVLRQQQFHDNTPGLALHHQVIPGVQMTVAPQSSHAGVRPNVIQPQPLVQSQQHLLDQYHDENTSGVRIIQLPAEPSYNAYQVSASQVSPVIVGGNXSWVQVPSQERVVISDGVSPQQQVTSHEKFRRIEDCSMCQTTLPHAHSDPVVPDERGSGAGPVPDSTPSHYSFPMEDNIKAQAPNMIMPVAMAPLKEGIAEQGAGIRPRVVGKLEPPDGVHHTETTGLSHNIEPQPEEFNHAGNSFFQEKIELKGRKQSPNDELMGTAALSYLDDVGHQHMVPVENWVKQDVLINKPMNNDMSMVDGRSMRTSECMVQGSPNEYTNERTGVVSKSDEIHNWIRQDHLKPIDGRMDTFKIHNSDAFVSNDYSFLPADKPSGNDNLGYSTHKSVEGEVILDNFGRSKLIADANQNNIAAVLPCSSSYRQNSRSGEHNEATQPPIWGIPGSNAQPNIGNPHTEDAALSSSSPSVRFGDVQDTPNSLFSNQDPWNIQHGTIFPPARQSKAALKKETFSCQDPFAEDTGSFGEQSLEAQLEDSLYQSFKQNLTFEHSRSAKGSAEDQQLQAVAENVAASVLHSRNPSNSDLHSRDVSCCDNIEDGSVQNNLMDVKCGHTTQEVWSRQLEKTNCGILASGFGKLQVIKNCDLEEQTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRSDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKSDRNLEKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDSHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGLEPYADLHYGAIIGGIVSNTLRPPIPDHCDPEWTLLMERCWSSEPSERPNFTEIASELRSIAAKISPKAQNSPKGQNQQLQQSPVQTQLNK 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium643g00007 1384 SUPERFAMILY Protein kinase-like (PK-like) 1082 1349 IPR011009 -
Vium643g00007 1384 ProSitePatterns Protein kinases ATP-binding region signature. 1094 1125 IPR017441 GO:0005524
Vium643g00007 1384 CDD STKc_MAP3K-like 1094 1351 - -
Vium643g00007 1384 Gene3D Phosphorylase Kinase; domain 1 1081 1175 - -
Vium643g00007 1384 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1081 1175 - -
Vium643g00007 1384 SUPERFAMILY CAD & PB1 domains 164 255 - -
Vium643g00007 1384 SMART PB1_new 163 252 IPR000270 GO:0005515
Vium643g00007 1384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1213 1225 IPR008271 GO:0004672|GO:0006468
Vium643g00007 1384 MobiDBLite consensus disorder prediction 1355 1384 - -
Vium643g00007 1384 SMART serkin_6 1088 1354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium643g00007 1384 MobiDBLite consensus disorder prediction 299 336 - -
Vium643g00007 1384 MobiDBLite consensus disorder prediction 867 935 - -
Vium643g00007 1384 PANTHER SERINE-THREONINE PROTEIN KINASE 215 1355 - -
Vium643g00007 1384 MobiDBLite consensus disorder prediction 299 327 - -
Vium643g00007 1384 MobiDBLite consensus disorder prediction 586 617 - -
Vium643g00007 1384 MobiDBLite consensus disorder prediction 1358 1384 - -
Vium643g00007 1384 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1176 1367 - -
Vium643g00007 1384 Gene3D Transferase(Phosphotransferase) domain 1 1176 1384 - -
Vium643g00007 1384 ProSiteProfiles Protein kinase domain profile. 1088 1354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium643g00007 1384 Pfam Protein tyrosine and serine/threonine kinase 1089 1351 IPR001245 GO:0004672|GO:0006468
Vium643g00007 1384 CDD PB1_UP2 152 250 - -
Vium643g00007 1384 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 168 252 - -
Vium643g00007 1384 PRINTS Tyrosine kinase catalytic domain signature 1170 1183 IPR001245 GO:0004672|GO:0006468
Vium643g00007 1384 PRINTS Tyrosine kinase catalytic domain signature 1278 1300 IPR001245 GO:0004672|GO:0006468
Vium643g00007 1384 PRINTS Tyrosine kinase catalytic domain signature 1322 1344 IPR001245 GO:0004672|GO:0006468
Vium643g00007 1384 PRINTS Tyrosine kinase catalytic domain signature 1207 1225 IPR001245 GO:0004672|GO:0006468
Vium643g00007 1384 MobiDBLite consensus disorder prediction 652 682 - -
Vium643g00007 1384 Pfam PB1 domain 168 251 IPR000270 GO:0005515
Vium643g00007 1384 MobiDBLite consensus disorder prediction 867 939 - -
Vium643g00007 1384 Gene3D - 169 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium643g00007 Vium-Chr643 34974 42775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium643g00007 147 624 MAP Kinase Kinase Kinase AT3G46920 40.909 1.81e-85 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium643g00007 PK_Tyr_Ser-Thr 1.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium643g00007 - - gmx:100819234 1957.18