Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium643g00004 ATGTGGCACCTCCACCTCTCGCTCCATTCATCAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGATATGAGAACGGAATTCCATGGGAATACTAGTGCTGGAAGTTCTTATCGAAACGTTGCAACACAGAGTCAGAGGAACTGCTTGTCTGAACACGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAACTGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTTGTTAGAGGTGGTGTCTCTCAAGTCTCTCAGGAGACAGTGCATCAAAGAAGTTCATCCCCTCAGGAGCGTGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGACCAGAAGAAGAACCATGCCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGAACAGGAAATGATAGTGTGCTTCAAGTTGACGTGGTTACAATATCTTCCAACATTTTGTCTGGAAGCAATGCCGATGCCAATGATCATGACGCCAGAAGGAACGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACCGGAGGTGCCGATGATCCTGGATCTCAAGATCGATGGCTAGTTGATTTCGGTGGTGATTTGTCAAATGATGGAGTTGGAGGAGCTTCTGCATATATGGGCAGCAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGCGGCTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGAAGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGTCTCCACGAGTATCACATGTCATGTGTGGATAAGTGGCTTACAGAAATACACGGTGTATGTCCTCTGTGCCGTGGAAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCACTGA 1440 0.4535 MWHLHLSLHSSEARISCSPPAETSTSSDMRTEFHGNTSAGSSYRNVATQSQRNCLSEHEEQAPPCQVSAGHSGRESYSDSSNTASTSFVAQQSSDPVSVTVSANKDVVNDVNNPVVRGGVSQVSQETVHQRSSSPQERVNFSSGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMAEGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLTEIHGVCPLCRGNVCGGFTESSANSEVQSH 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium643g00004 479 MobiDBLite consensus disorder prediction 166 186 - -
Vium643g00004 479 MobiDBLite consensus disorder prediction 11 57 - -
Vium643g00004 479 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 10 478 - -
Vium643g00004 479 MobiDBLite consensus disorder prediction 71 97 - -
Vium643g00004 479 Pfam Ring finger domain 417 460 IPR001841 -
Vium643g00004 479 SUPERFAMILY RING/U-box 406 463 - -
Vium643g00004 479 ProSiteProfiles Zinc finger RING-type profile. 418 460 IPR001841 -
Vium643g00004 479 SMART ring_2 418 459 IPR001841 -
Vium643g00004 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 464 IPR013083 -
Vium643g00004 479 MobiDBLite consensus disorder prediction 110 141 - -
Vium643g00004 479 MobiDBLite consensus disorder prediction 9 97 - -
Vium643g00004 479 FunFam Putative RING zinc finger domain superfamily protein 385 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium643g00004 Vium-Chr643 14012 17279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium643g00004 293 464 C3H Transcription Factor Family AT5G45290 46.875 2.41e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium643g00004 - - gmx:100783604 815.068