Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium643g00003 ATGGGTTCCTCCTCTAGTAGACCCGCCACTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTCATTTAGCAAGAAATTTTGATGGTGAAATTCATAAAGTCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGATATGAGAACGGAATTCCATGGGAATACTAGTGCTGGAAGTTCTTATCGAAACGTTGCAACACAGAGTCAGAGGAACTGCTTGTCTGAACACGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAACTGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTTGTTAGAGGTGGTGTCTCTCAAGTCTCTCAGGAGACAGTGCATCAAAGAAGTTCATCCCCTCAGGAGCGTGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGACCAGAAGAAGAACCATGCCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGAACAGGAAATGATAGTGTGCTTCAAGTTGACGTGGTTACAATATCTTCCAACATTTTGTCTGGAAGCAATGCCGATGCCAATGATCATGACGCCAGAAGGAACGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACCGGAGGTGCCGATGATCCTGGATCTCAAGATCGATGGCTAGTTGATTTCGGTGGTGATTTGTCAAATGATGGAGTTGGAGGAGCTTCTGCATATATGGGCAGCAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGCGGCTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGAAGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGTCTCCACGAGTATCACATGTCATGTGTGGATAAGTGGCTTACAGAAATACACGGTGTATGTCCTCTGTGCCGTGGAAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCACTGA 1623 0.4498 MGSSSSRPATRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVHLARNFDGEIHKVTEESSLSCTEARISCSPPAETSTSSDMRTEFHGNTSAGSSYRNVATQSQRNCLSEHEEQAPPCQVSAGHSGRESYSDSSNTASTSFVAQQSSDPVSVTVSANKDVVNDVNNPVVRGGVSQVSQETVHQRSSSPQERVNFSSGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMAEGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLTEIHGVCPLCRGNVCGGFTESSANSEVQSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium643g00003 540 MobiDBLite consensus disorder prediction 182 202 - -
Vium643g00003 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Vium643g00003 540 SUPERFAMILY RING/U-box 467 524 - -
Vium643g00003 540 MobiDBLite consensus disorder prediction 74 118 - -
Vium643g00003 540 MobiDBLite consensus disorder prediction 132 158 - -
Vium643g00003 540 Pfam Ring finger domain 478 521 IPR001841 -
Vium643g00003 540 SMART ring_2 479 520 IPR001841 -
Vium643g00003 540 MobiDBLite consensus disorder prediction 74 158 - -
Vium643g00003 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 525 IPR013083 -
Vium643g00003 540 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Vium643g00003 540 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Vium643g00003 540 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium643g00003 Vium-Chr643 14012 17279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium643g00003 354 525 C3H Transcription Factor Family AT5G45290 46.875 4.49e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium643g00003 - - gmx:100783604 907.131