Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium643g00003 | ATGGGTTCCTCCTCTAGTAGACCCGCCACTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTCATTTAGCAAGAAATTTTGATGGTGAAATTCATAAAGTCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGATATGAGAACGGAATTCCATGGGAATACTAGTGCTGGAAGTTCTTATCGAAACGTTGCAACACAGAGTCAGAGGAACTGCTTGTCTGAACACGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAACTGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTTGTTAGAGGTGGTGTCTCTCAAGTCTCTCAGGAGACAGTGCATCAAAGAAGTTCATCCCCTCAGGAGCGTGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGACCAGAAGAAGAACCATGCCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGAACAGGAAATGATAGTGTGCTTCAAGTTGACGTGGTTACAATATCTTCCAACATTTTGTCTGGAAGCAATGCCGATGCCAATGATCATGACGCCAGAAGGAACGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACCGGAGGTGCCGATGATCCTGGATCTCAAGATCGATGGCTAGTTGATTTCGGTGGTGATTTGTCAAATGATGGAGTTGGAGGAGCTTCTGCATATATGGGCAGCAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGCGGCTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGAAGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGTCTCCACGAGTATCACATGTCATGTGTGGATAAGTGGCTTACAGAAATACACGGTGTATGTCCTCTGTGCCGTGGAAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCACTGA | 1623 | 0.4498 | MGSSSSRPATRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVHLARNFDGEIHKVTEESSLSCTEARISCSPPAETSTSSDMRTEFHGNTSAGSSYRNVATQSQRNCLSEHEEQAPPCQVSAGHSGRESYSDSSNTASTSFVAQQSSDPVSVTVSANKDVVNDVNNPVVRGGVSQVSQETVHQRSSSPQERVNFSSGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMAEGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLTEIHGVCPLCRGNVCGGFTESSANSEVQSH | 540 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium643g00003 | 540 | MobiDBLite | consensus disorder prediction | 182 | 202 | - | - | |
Vium643g00003 | 540 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 539 | - | - | |
Vium643g00003 | 540 | SUPERFAMILY | RING/U-box | 467 | 524 | - | - | |
Vium643g00003 | 540 | MobiDBLite | consensus disorder prediction | 74 | 118 | - | - | |
Vium643g00003 | 540 | MobiDBLite | consensus disorder prediction | 132 | 158 | - | - | |
Vium643g00003 | 540 | Pfam | Ring finger domain | 478 | 521 | IPR001841 | - | |
Vium643g00003 | 540 | SMART | ring_2 | 479 | 520 | IPR001841 | - | |
Vium643g00003 | 540 | MobiDBLite | consensus disorder prediction | 74 | 158 | - | - | |
Vium643g00003 | 540 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 445 | 525 | IPR013083 | - | |
Vium643g00003 | 540 | FunFam | Putative RING zinc finger domain superfamily protein | 446 | 526 | - | - | |
Vium643g00003 | 540 | ProSiteProfiles | Zinc finger RING-type profile. | 479 | 521 | IPR001841 | - | |
Vium643g00003 | 540 | MobiDBLite | consensus disorder prediction | 227 | 247 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium643g00003 | Vium-Chr643 | 14012 | 17279 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium643g00003 | 354 | 525 | C3H Transcription Factor Family | AT5G45290 | 46.875 | 4.49e-40 | 151 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium643g00003 | - | - | gmx:100783604 | 907.131 |