Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium643g00001 ATGAACTTTGTTCCTACTCTTCGGTCTGGTGAATGGAGTGATATTGGAGAACGCCCTTCCATGGAGGATACACACATATGCATTGGAGATTTGGCCAAAAAATTTGGCAATAACGAACTTTCTGAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGTGCTGCACAGTTTGTTCGTGATCATCTACCACAGGTGATTGTTGAGGATGCTGACTTTCCTTTGGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAGATCATGTTCTATTGAGTCTTCCCTATCTTCTGGCACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCCGGAGACTGTCGTGCCGTGTTATCCCGTGGTGGCCGAGCTGTAGAAATGTCCAAAGATCACAGACCATTGTGCATGAAAGAAAGGATGAGGATTGAGTCTGTAGGTGGATACATAGATGATGGTTACCTGAATGGTCAGTTAGGTGTGACTCGTGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGAGATGAATGGAAAACATGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAGTTTTTGATAATTGGGAGTGATGGAATATGGGATGTTTTTCGCAGCCAGAATGCAGTGGACTTTGCTCGAAGGAGGCTTCAAGAACACAATGATGTCAAGCAGTGTTGCAGGGAGATAATAGGAGAAGCAATAAAGAGAGAAGCAACAGACAATTTGACAGTGGTGATGGTGTGTTTTCACTCAGAACCACCACCTTCTGTGGTAGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAACCTTAAATGCTTGCTAGAAGGATAA 921 0.4354 MNFVPTLRSGEWSDIGERPSMEDTHICIGDLAKKFGNNELSEEAISFYGVFDGHGGKSAAQFVRDHLPQVIVEDADFPLELEKVVTRSFLETDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAVEMSKDHRPLCMKERMRIESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKHGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCREIIGEAIKREATDNLTVVMVCFHSEPPPSVVVERPRVRRSISAEGLQNLKCLLEG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium643g00001 306 ProSitePatterns PPM-type phosphatase domain signature. 47 55 IPR000222 GO:0043169
Vium643g00001 306 Pfam Protein phosphatase 2C 18 265 IPR001932 -
Vium643g00001 306 Gene3D - 4 277 IPR036457 -
Vium643g00001 306 SMART PP2C_4 1 271 IPR001932 -
Vium643g00001 306 SUPERFAMILY PP2C-like 4 275 IPR036457 -
Vium643g00001 306 CDD PP2Cc 8 273 IPR001932 -
Vium643g00001 306 PANTHER PROTEIN PHOSPHATASE 2C 9 271 IPR015655 GO:0004722|GO:0006470
Vium643g00001 306 FunFam Probable protein phosphatase 2C 22 1 276 - -
Vium643g00001 306 ProSiteProfiles PPM-type phosphatase domain profile. 8 273 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium643g00001 Vium-Chr643 30 2093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium643g00001 3 306 PP2C-type Phosphatase Gene Family AT2G25620 60.714 1.06e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vium643g00001 PP2C 3e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium643g00001 K14803 - gmx:100782648 564.688